PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926910.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 306aa    MW: 34318.2 Da    PI: 7.9106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926910.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.2e-53141441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     lppGfrFhP+deelv++yL+kkv+ +     +      +i +vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd
  XP_010926910.1  14 LPPGFRFHPRDEELVCDYLAKKVSVDGgndsFY--GcpMIIDVDLNKCEPWDLPEMACVGGKEWYFFSLRDRKYATGQRTNRATQSGYWKATGKD 106
                     79********************98777544422..23369**************7667799********************************** PP

             NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++v + +g lvg++ktLvfy+grapkg+kt Wvmhe+r+
  XP_010926910.1 107 RQVSR-RGVLVGMRKTLVFYQGRAPKGSKTAWVMHEFRM 144
                     ***99.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-613167IPR003441NAC domain
PROSITE profilePS5100555.37214167IPR003441NAC domain
PfamPF023654.2E-2715144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSMSFLSMM EARLPPGFRF HPRDEELVCD YLAKKVSVDG GNDSFYGCPM IIDVDLNKCE  60
PWDLPEMACV GGKEWYFFSL RDRKYATGQR TNRATQSGYW KATGKDRQVS RRGVLVGMRK  120
TLVFYQGRAP KGSKTAWVMH EFRMEGPCDP PKFSFREDWV LCRVFCKSRG VASKPIAETS  180
YEDTGSSSLP PLMDSYINFD QAPPSLEAYE QVSCFSNLPP SPASHHPNAI VPIIPLVERS  240
LPANISAHMG GLPADMASCD KKAIRAVLNH LTKLESNPKR EVHPNLNQGS LESYLAENGL  300
CHIWNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51916812166NO APICAL MERISTEM PROTEIN
1ut4_B6e-51916812166NO APICAL MERISTEM PROTEIN
1ut7_A6e-51916812166NO APICAL MERISTEM PROTEIN
1ut7_B6e-51916812166NO APICAL MERISTEM PROTEIN
3swm_A7e-51916815169NAC domain-containing protein 19
3swm_B7e-51916815169NAC domain-containing protein 19
3swm_C7e-51916815169NAC domain-containing protein 19
3swm_D7e-51916815169NAC domain-containing protein 19
3swp_A7e-51916815169NAC domain-containing protein 19
3swp_B7e-51916815169NAC domain-containing protein 19
3swp_C7e-51916815169NAC domain-containing protein 19
3swp_D7e-51916815169NAC domain-containing protein 19
4dul_A6e-51916812166NAC domain-containing protein 19
4dul_B6e-51916812166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926910.20.0NAC domain-containing protein 21/22
SwissprotQ84TE63e-98NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3Z0W50.0A0A2H3Z0W5_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008806836.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-100NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]