PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 870aa MW: 96923.9 Da PI: 7.0966 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 162 | 263 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + + XP_010926859.1 162 FCKTLTASDTSTHGGFSVLRRHADEClppldmRLQPPT-QELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEH 253 99*****************************9667665.49************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_010926859.1 254 GELRVGVRRA 263 99*****996 PP | |||||||
2 | Auxin_resp | 119.3 | 3e-39 | 288 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+seF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+d+ +Wp+SkWr+Lk XP_010926859.1 288 AWHAVTTGTMFTVYYKPRTSPSEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTDDVDSNSWPGSKWRCLK 370 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-40 | 155 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.73E-41 | 155 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.57E-21 | 160 | 262 | No hit | No description |
PROSITE profile | PS50863 | 11.533 | 162 | 264 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-22 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-21 | 162 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.9E-37 | 288 | 370 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.9E-6 | 703 | 781 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.337 | 745 | 827 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.18E-12 | 745 | 822 | No hit | No description |
Pfam | PF02309 | 1.5E-6 | 791 | 832 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 870 aa Download sequence Send to blast |
MASSEVTRGN GSNGRGESFS SVCSESGAAA AAAAARTVAS AASAAAAAGR DAENALYTEL 60 WLACAGPLVT IPREGERVFY FPQGHIEQVE ASTNQLADKK MKIYDLPPKI LCRVINVQLK 120 AEPETDEVFA QVTLFPEANQ DETAVEKETL PPPPPRPHVH SFCKTLTASD TSTHGGFSVL 180 RRHADECLPP LDMRLQPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL 240 VAGDAFIFLR GEHGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVTTGTMFTV 300 YYKPRTSPSE FIVPYDQYME SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGTDDVDSNS 360 WPGSKWRCLK VRWDETSFVP RPERVSPWNI EPALAPPLNP LPTPRTKRPR PNAMPSSPDS 420 SVLTKEGAIK VTADASQVHG VPRVLQGQEN MTLRSNLSDS NDSDTVQKPL MWRSSLDEDK 480 NDDSCQRRLG SDNWMQINRH EAAYKDMLSG FRPFGNMHGF GKHFIEQIST ATNPLKNHFQ 540 DQEGSINLCL DQYSLMPSNS PFNMESTLRM STHAAESPYQ KVRNVTYGEL EDYSLVQGHR 600 VEQNPPNWPA HRQSTSQSQN FSHQRVVKPQ PLVAAQNEGT RTKESGNCKL FGFHLNSSPA 660 PSDHVMRSEH LKPQLNATND VVSHTQPTVA QNQSQAFEGD HHSKLPNGTK SVTTAPAATE 720 REMHHQHCPQ TPKEVQSKLQ GSSSRSCTKV HKQGIALGRS VDLTKFNCYD ELIAELDQMF 780 EFHGELMAPN KNWLIVYTDD EGDMMLVGDD PWLEFCSMVR KIYIYTREEV QKMNPGTLNP 840 RAEGIAIVMG GNTAAKEKKG PLPTTPNPEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-172 | 38 | 392 | 1 | 354 | Auxin response factor 1 |
4ldw_A | 1e-172 | 38 | 392 | 1 | 354 | Auxin response factor 1 |
4ldw_B | 1e-172 | 38 | 392 | 1 | 354 | Auxin response factor 1 |
4ldx_A | 1e-172 | 38 | 392 | 1 | 354 | Auxin response factor 1 |
4ldx_B | 1e-172 | 38 | 392 | 1 | 354 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 406 | 410 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926858.1 | 0.0 | auxin response factor 2A | ||||
Refseq | XP_010926859.1 | 0.0 | auxin response factor 2A | ||||
Swissprot | Q2LAJ3 | 0.0 | ARF2A_SOLLC; Auxin response factor 2A | ||||
TrEMBL | A0A2H3X1J8 | 0.0 | A0A2H3X1J8_PHODC; Auxin response factor | ||||
STRING | XP_008776920.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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