PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926858.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ARF

Protein Properties

Length: 870aa MW: 96923.9 Da PI: 7.0966

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926858.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.5e-23	162	263	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + + XP_010926858.1 162 FCKTLTASDTSTHGGFSVLRRHADEClppldmRLQPPT-QELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEH 253 99***************************9667665.49********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_010926858.1 254 GELRVGVRRA 263 99***996 PP
2	Auxin_resp	119.3	3e-39	288	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+seF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+d+ +Wp+SkWr+Lk XP_010926858.1 288 AWHAVTTGTMFTVYYKPRTSPSEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTDDVDSNSWPGSKWRCLK 370 89*******************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-40	155	277	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.73E-41	155	291	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.57E-21	160	262	No hit	No description
PROSITE profile	PS50863	11.533	162	264	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-22	162	264	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-21	162	263	IPR003340	B3 DNA binding domain
Pfam	PF06507	6.9E-37	288	370	IPR010525	Auxin response factor
Pfam	PF02309	6.9E-6	703	781	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	25.337	745	827	IPR000270	PB1 domain
SuperFamily	SSF54277	1.18E-12	745	822	No hit	No description
Pfam	PF02309	1.5E-6	791	832	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MASSEVTRGN GSNGRGESFS SVCSESGAAA AAAAARTVAS AASAAAAAGR DAENALYTEL 60 WLACAGPLVT IPREGERVFY FPQGHIEQVE ASTNQLADKK MKIYDLPPKI LCRVINVQLK 120 AEPETDEVFA QVTLFPEANQ DETAVEKETL PPPPPRPHVH SFCKTLTASD TSTHGGFSVL 180 RRHADECLPP LDMRLQPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL 240 VAGDAFIFLR GEHGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVTTGTMFTV 300 YYKPRTSPSE FIVPYDQYME SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGTDDVDSNS 360 WPGSKWRCLK VRWDETSFVP RPERVSPWNI EPALAPPLNP LPTPRTKRPR PNAMPSSPDS 420 SVLTKEGAIK VTADASQVHG VPRVLQGQEN MTLRSNLSDS NDSDTVQKPL MWRSSLDEDK 480 NDDSCQRRLG SDNWMQINRH EAAYKDMLSG FRPFGNMHGF GKHFIEQIST ATNPLKNHFQ 540 DQEGSINLCL DQYSLMPSNS PFNMESTLRM STHAAESPYQ KVRNVTYGEL EDYSLVQGHR 600 VEQNPPNWPA HRQSTSQSQN FSHQRVVKPQ PLVAAQNEGT RTKESGNCKL FGFHLNSSPA 660 PSDHVMRSEH LKPQLNATND VVSHTQPTVA QNQSQAFEGD HHSKLPNGTK SVTTAPAATE 720 REMHHQHCPQ TPKEVQSKLQ GSSSRSCTKV HKQGIALGRS VDLTKFNCYD ELIAELDQMF 780 EFHGELMAPN KNWLIVYTDD EGDMMLVGDD PWLEFCSMVR KIYIYTREEV QKMNPGTLNP 840 RAEGIAIVMG GNTAAKEKKG PLPTTPNPEN

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MASSEVTRGN GSNGRGESFS SVCSESGAAA AAAAARTVAS AASAAAAAGR DAENALYTEL  60
WLACAGPLVT IPREGERVFY FPQGHIEQVE ASTNQLADKK MKIYDLPPKI LCRVINVQLK  120
AEPETDEVFA QVTLFPEANQ DETAVEKETL PPPPPRPHVH SFCKTLTASD TSTHGGFSVL  180
RRHADECLPP LDMRLQPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL  240
VAGDAFIFLR GEHGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVTTGTMFTV  300
YYKPRTSPSE FIVPYDQYME SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGTDDVDSNS  360
WPGSKWRCLK VRWDETSFVP RPERVSPWNI EPALAPPLNP LPTPRTKRPR PNAMPSSPDS  420
SVLTKEGAIK VTADASQVHG VPRVLQGQEN MTLRSNLSDS NDSDTVQKPL MWRSSLDEDK  480
NDDSCQRRLG SDNWMQINRH EAAYKDMLSG FRPFGNMHGF GKHFIEQIST ATNPLKNHFQ  540
DQEGSINLCL DQYSLMPSNS PFNMESTLRM STHAAESPYQ KVRNVTYGEL EDYSLVQGHR  600
VEQNPPNWPA HRQSTSQSQN FSHQRVVKPQ PLVAAQNEGT RTKESGNCKL FGFHLNSSPA  660
PSDHVMRSEH LKPQLNATND VVSHTQPTVA QNQSQAFEGD HHSKLPNGTK SVTTAPAATE  720
REMHHQHCPQ TPKEVQSKLQ GSSSRSCTKV HKQGIALGRS VDLTKFNCYD ELIAELDQMF  780
EFHGELMAPN KNWLIVYTDD EGDMMLVGDD PWLEFCSMVR KIYIYTREEV QKMNPGTLNP  840
RAEGIAIVMG GNTAAKEKKG PLPTTPNPEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-172	38	392	1	354	Auxin response factor 1
4ldw_A	1e-172	38	392	1	354	Auxin response factor 1
4ldw_B	1e-172	38	392	1	354	Auxin response factor 1
4ldx_A	1e-172	38	392	1	354	Auxin response factor 1
4ldx_B	1e-172	38	392	1	354	Auxin response factor 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	410	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255\|RuleBase:RU004561, ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229, ECO:0000269\|PubMed:27645097, ECO:0000269\|PubMed:28167023}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229, ECO:0000269\|PubMed:27645097, ECO:0000269\|PubMed:28167023}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926858.1	0.0	auxin response factor 2A
Refseq	XP_010926859.1	0.0	auxin response factor 2A
Swissprot	Q2LAJ3	0.0	ARF2A_SOLLC; Auxin response factor 2A
TrEMBL	A0A2H3X1J8	0.0	A0A2H3X1J8_PHODC; Auxin response factor
STRING	XP_008776920.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1178	36	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Breitel DA, et al. AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229] Xu T, et al. SlARF2a plays a negative role in mediating axillary shoot formation. Sci Rep, 2016. 6: p. 33728 [PMID:27645097] Ren Z,Liu R,Gu W,Dong X The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence. Plant Sci., 2017. 256: p. 103-111 [PMID:28167023]