PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926838.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 26423 Da PI: 6.5189

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926838.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.7	2e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqvtfskRr g++KKA EL vLCdaev +i+fs++gk ye++s XP_010926838.1 10 RIEDKASRQVTFSKRRGGLFKKARELAVLCDAEVGLIVFSPSGKPYEFCS 59 8***********************************************96 PP
2	K-box	29.4	3.4e-11	114	168	42	96
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 d+ +L+++eL+qLe++L ++ k+i s+K++l+++ i++ q ++ + ++ ++L+ XP_010926838.1 114 DIAELDVNELEQLEKELSDASKQIQSRKTKLMMDTINKFQDEKRLMMDTINKLQD 168 899*************************************999988888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.109	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.87E-41	2	79	No hit	No description
SuperFamily	SSF55455	1.44E-31	3	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-27	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.89	70	192	IPR002487	Transcription factor, K-box
Pfam	PF01486	2.8E-6	114	169	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MRRGKVQIRR IEDKASRQVT FSKRRGGLFK KARELAVLCD AEVGLIVFSP SGKPYEFCSS 60 SSMEDTITRY EQISDAGQDV SKNIDKEQNH GKDFACPTIN SKLMKQSPWS LETDIAELDV 120 NELEQLEKEL SDASKQIQSR KTKLMMDTIN KFQDEKRLMM DTINKLQDER KTMLEEKRFL 180 ESVVVMEQNG AAVEHHKDVS NNSEGALSHG VHEDPEVQLA KCHAPRCLSL FS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-18	1	91	1	95	MEF2C
5f28_B	2e-18	1	91	1	95	MEF2C
5f28_C	2e-18	1	91	1	95	MEF2C
5f28_D	2e-18	1	91	1	95	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926838.1	1e-173	MADS-box transcription factor 51 isoform X1
Swissprot	Q9XJ61	5e-41	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A2H3YZX5	1e-116	A0A2H3YZX5_PHODC; MADS-box transcription factor 51-like isoform X1
STRING	XP_008806426.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	7e-41	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]