PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926562.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 406aa    MW: 44679.4 Da    PI: 7.7733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926562.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16127172147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+ +  gR++k+c++rw++ 
   XP_010926562.1 127 RGHWRPAEDSKLRELVALHGPQNWNLIAENLE-GRSGKSCRLRWFNQ 172
                      899*****************************.***********996 PP
2Myb_DNA-binding56.18.4e-18179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010926562.1 179 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 222
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.351122173IPR017930Myb domain
SMARTSM007174.7E-14126175IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-28127220IPR009057Homeodomain-like
PfamPF002495.7E-16127172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-26128180IPR009057Homeodomain-like
CDDcd001674.35E-13130171No hitNo description
PROSITE profilePS5129426.953174228IPR017930Myb domain
SMARTSM007179.7E-15178226IPR001005SANT/Myb domain
PfamPF002491.9E-14179221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-21181227IPR009057Homeodomain-like
CDDcd001674.41E-12181221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MALKQCNGSK GLRSFPPSSS SKGLFAEMSS LSINPASSGE SYCSTKGSEK NSRTSSLIMR  60
NYIGLEDHPP RNNEDGGVKW SDASDGFGEN HVNATREESP EGENTNEGSL GGRETAADCG  120
QSKLCARGHW RPAEDSKLRE LVALHGPQNW NLIAENLEGR SGKSCRLRWF NQLDPRINRS  180
AFTEEEEEKL MAAHRLYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSNACRRRKL  240
SQAVPMRLED ATATSVACGF NTNLHLPFTH LPLAMCGSSG SYHITTSEGG EDSVSRYSGF  300
SSDQAPYNFL SGIKAQDKAR SFRSTNSWCL QRPRDESFMG SYSQHPFMVA MQQSRFPSYL  360
SDYSTASGVS AAESSSSSSF KENGENGHFE ATASPPFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331272277107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926562.10.0transcription factor CSA
TrEMBLA0A2H3XAP10.0A0A2H3XAP1_PHODC; transcription factor CSA-like
STRINGXP_008781016.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-72myb domain protein 105