PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926535.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 359aa    MW: 39837.7 Da    PI: 8.5077
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926535.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.21.6e-43842383135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssas 83 
                     ++kdrhski T+ g+RdRR+Rls+e+a++fFdLqd+LGfdk+skt++WLl+++k aik+l+                + ss sece++s +s ++
  XP_010926535.1  84 VRKDRHSKIFTATGPRDRRMRLSLEVARKFFDLQDMLGFDKASKTVQWLLTMSKSAIKDLAAAsrprarpfshespkNDSSTSECEDVSTVSDHK 178
                     79*************************************************************78888877766654333336666666555555 PP

             TCP  84 nsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                      +  +          k+ +++    ++++++a    +a+e+rakarararertrek+r++++
  XP_010926535.1 179 GK--PsdvaatsgeaKRPRAKRAAVRASRKEAFSPTIARETRAKARARARERTREKKRMSSE 238
                     33..14477788775555555566777777777889999*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-4385235IPR005333Transcription factor, TCP
PROSITE profilePS5136935.06285143IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.52215232IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MERSVSGQLE LNPCPPETDP HPSFFPFSTP NWNSDSLQDL LSAHLIFPFA ASTANTPQPP  60
PPDPSLNINS MATIAPPTKS RRVVRKDRHS KIFTATGPRD RRMRLSLEVA RKFFDLQDML  120
GFDKASKTVQ WLLTMSKSAI KDLAAASRPR ARPFSHESPK NDSSTSECED VSTVSDHKGK  180
PSDVAATSGE AKRPRAKRAA VRASRKEAFS PTIARETRAK ARARARERTR EKKRMSSEML  240
KEGGRVNQWA SSSLPFDTVE EESGCHDLKS SLDLVAEVEE RCSSTPHQCD NHVDKQAQDV  300
PLAAGSVPIS ILDYGHSIVG INDTVGIFQE QWDVERVLLQ ADVQFHSRPW EAFNNSPIA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926535.20.0transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A2H3XDX11e-145A0A2H3XDX1_PHODC; transcription factor TEOSINTE BRANCHED 1-like
STRINGXP_008782352.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-27TCP domain protein 12