PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926493.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family RAV
Protein Properties Length: 338aa    MW: 37310.4 Da    PI: 9.6849
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926493.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-1253101155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  + +Aa+a++ a+++++g
  XP_010926493.1  53 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFAEEADAARAYDVAAQRFRG 101
                     78****9888.8*********3.....5**********99*************98 PP
2B398.73.7e-31177276196
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k+ tpsdv+k++rlv+pk++ae+h     g+  ++++ l +ed sg+ W+++++y+++s++yvltkGW++Fvk++ Lk gD+v F++++  e+
  XP_010926493.1 177 FSKAVTPSDVGKLNRLVIPKQHAEKHfplkcGSG-TTGILLNFEDASGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKPGDMVCFRRSRGPEK 270
                     8899*************************97444.4789*************************************************9887777 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +l++ +
  XP_010926493.1 271 QLYIDW 276
                     777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.89E-2453108No hitNo description
SuperFamilySSF541711.96E-1653109IPR016177DNA-binding domain
PfamPF008471.0E-754101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2054109IPR001471AP2/ERF domain
PROSITE profilePS5103219.50654109IPR001471AP2/ERF domain
SMARTSM003802.9E-2954115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-37175278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29176274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-29176270No hitNo description
PROSITE profilePS5086313.803177278IPR003340B3 DNA binding domain
SMARTSM010191.3E-24177280IPR003340B3 DNA binding domain
PfamPF023621.6E-27177276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYGSSVEEVS SESEKRPAPM PEPLRRMGSG GSVVLDPTPD IGLEAESRKL PSSQYKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFAEEADAAR AYDVAAQRFR GREAVTNFTP LSENDDDGAA  120
ELAFLADHSK AEIVDMLRKH TYCDELRQSK RAGTTSGSTV GKRNPLSSLG LARDLLFSKA  180
VTPSDVGKLN RLVIPKQHAE KHFPLKCGSG TTGILLNFED ASGKIWRFRY SYWNSSQSYV  240
LTKGWSRFVK EKSLKPGDMV CFRRSRGPEK QLYIDWNPRG VAADLIAPQV VRLFGVNILR  300
TPVGCGGCPG GGGEGKRGRE MELFPPEQFV KKQYVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5117628713124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926493.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822801e-124RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A2H3ZLG20.0A0A2H3ZLG2_PHODC; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_008799316.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-117related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]