PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926426.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 241aa    MW: 26930.1 Da    PI: 5.4837
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926426.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.32.1e-107751998
           NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    +++P +rikki++adedv           +ka elf+ +l  r++  + +   +tl+   ++++v++   fdfl+d+v +
  XP_010926426.1  7 TRFPASRIKKIMQADEDV-----------AKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKSYSAFDFLTDVVNK 75
                    579**************8...........79**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.54E-15377IPR009072Histone-fold
PfamPF008083.9E-10860IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-15974IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVAKALEL FLQDLCDRTY EVTLQRGAKT LNSLHLKQCV  60
KSYSAFDFLT DVVNKVPNLG STEPCGDEKG ISRRRKTLAH DGDLETNKEL RSPKMAMRSA  120
NISPRGRGRG RGRGRGRPRT RDIGCVKFED DNDMFPEHGD LSRETEGEEK GLEGKENMVQ  180
SVHPSCSSAS VEGATSTAEA KHDEFSAWPL PDVVGNIDVE PSKLVQLTMQ IDEDEDYDNE  240
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196SRRRKT
2126135RGRGRGRGRG
3130140RGRGRGRPRTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926426.11e-180dr1-associated corepressor homolog isoform X2
TrEMBLA0A2H3XDM71e-134A0A2H3XDM7_PHODC; dr1-associated corepressor homolog isoform X1
STRINGXP_008782237.11e-135(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-41nuclear factor Y, subunit C11