PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926366.1 | ||||||||
Common Name | STMADS11-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26001.7 Da PI: 7.0636 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeEL +LCda+va+iifsstgkl+e+ss XP_010926366.1 10 KIDNATARQVTFSKRRRGLFKKAEELAILCDADVALIIFSSTGKLFEFSS 59 69**********************************************96 PP | |||||||
2 | K-box | 58.8 | 2.3e-20 | 90 | 171 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++L k++ + ++R++ Ge+L+ L+++eLqqLe++Le++l+ + ++K + ++eqi++lq+k l een++Lrk++ XP_010926366.1 90 NSNYTRLDKQVAEASLQLRQMRGEELQGLTMQELQQLEKNLETGLSCVLERKGQQIMEQINHLQQKGMHLMEENERLRKQVV 171 57899**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.73E-40 | 2 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-30 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.11 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.7E-17 | 91 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELAILCD ADVALIIFSS TGKLFEFSSS 60 SMKEILEKHS LHSKNLQKVE PPSLDLNLEN SNYTRLDKQV AEASLQLRQM RGEELQGLTM 120 QELQQLEKNL ETGLSCVLER KGQQIMEQIN HLQQKGMHLM EENERLRKQV VEMARAGRRV 180 LTDSENVMYE DGQSSESVTN ASQLVVPPNY DDSSDTSLKL GLPVHNMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 70 | 1 | 70 | MEF2C |
5f28_B | 2e-20 | 1 | 70 | 1 | 70 | MEF2C |
5f28_C | 2e-20 | 1 | 70 | 1 | 70 | MEF2C |
5f28_D | 2e-20 | 1 | 70 | 1 | 70 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926365.1 | 1e-167 | MADS-box protein JOINTLESS isoform X1 | ||||
Refseq | XP_010926366.1 | 1e-167 | MADS-box protein JOINTLESS isoform X1 | ||||
Refseq | XP_019707170.1 | 1e-167 | MADS-box protein JOINTLESS isoform X1 | ||||
Swissprot | Q9FUY6 | 1e-104 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | Q2NNB9 | 1e-160 | Q2NNB9_ELAGV; MADS box transcription factor | ||||
STRING | GSMUA_Achr10P19290_001 | 1e-117 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-100 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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