PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926222.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32633.7 Da PI: 5.1207

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926222.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.7e-18	88	140	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL rqV +WFqNrRa++k XP_010926222.1 88 KKRLNMEQVRTLEKNFELGNKLEPERKIQLAKALGLRPRQVAIWFQNRRARWK 140 556899**********************************************9 PP
2	HD-ZIP_I/II	128.1	3.8e-41	86	176	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqv++LE++Fe +kLeperK +la++Lgl+prqva+WFqnrRAR+ktkq+Ekdy++Lkr+++a+k+en++L++++++L++e+ XP_010926222.1 86 EKKKRLNMEQVRTLEKNFELGNKLEPERKIQLAKALGLRPRQVAIWFQNRRARWKTKQMEKDYDVLKRQFEAIKSENDALQAQNKKLQAEI 176 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-19	62	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-19	77	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	82	142	IPR001356	Homeobox domain
SMART	SM00389	3.5E-17	85	146	IPR001356	Homeobox domain
CDD	cd00086	1.26E-15	87	143	No hit	No description
Pfam	PF00046	1.5E-15	87	140	IPR001356	Homeobox domain
PRINTS	PR00031	1.4E-5	113	122	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	117	140	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	122	138	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-15	142	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MACNGMASHS FPPNFTLQMQ TPYEEEHPLP TSLNPILPTT SCTNLQDFRG VGPMLGRISM 60 SFSGMEACEE MNADDDLSDE CSQAGEKKKR LNMEQVRTLE KNFELGNKLE PERKIQLAKA 120 LGLRPRQVAI WFQNRRARWK TKQMEKDYDV LKRQFEAIKS ENDALQAQNK KLQAEILALK 180 GREASELINL NKETEGSCSN RSENSSEINL DISRTSATES PLNPHQSIPF FPSIRPADID 240 QLLQSSSRPE LQCPKIEQGI PDGTYGNLLC SMEEQASFWP WSDHQGFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926222.1	0.0	homeobox-leucine zipper protein HOX21
Swissprot	Q8S7W9	1e-102	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	A0A2H3XA49	0.0	A0A2H3XA49_PHODC; homeobox-leucine zipper protein HOX21-like isoform X2
STRING	XP_008797128.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-93	HD-ZIP family protein