PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | CO-like | ||||||||
Protein Properties | Length: 430aa MW: 47050.9 Da PI: 6.0525 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.4 | 2e-05 | 2 | 34 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 e+ C+ + +++ +C+++ lC C + +H+ XP_010926186.1 2 EPLCEFCWTQRALVYCKSDAARLCLPCDSFIHS 34 689****************************95 PP | |||||||
2 | zf-B_box | 21.2 | 6e-07 | 46 | 90 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee.........HkgHtv 39 +C+++ ++++ C d++ lC+dC + H++Htv XP_010926186.1 46 LICDRCLSQPAAVRCLDDRLSLCQDCDWGSpgcpgpghrHRRHTV 90 69*************************999999999966666876 PP | |||||||
3 | CCT | 64.6 | 2.8e-22 | 374 | 417 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+k+R+F K+irY+sRKa+A++R+RvKGrFvk+ XP_010926186.1 374 RNEAKMRYNEKKKSRLFGKQIRYASRKARADTRKRVKGRFVKAG 417 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.774 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.39E-5 | 3 | 47 | No hit | No description |
CDD | cd00021 | 2.89E-6 | 47 | 90 | No hit | No description |
Pfam | PF06203 | 2.8E-17 | 374 | 416 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.674 | 374 | 416 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MEPLCEFCWT QRALVYCKSD AARLCLPCDS FIHSANALSR RHLRALICDR CLSQPAAVRC 60 LDDRLSLCQD CDWGSPGCPG PGHRHRRHTV NCYSGCPSLP ELSRMWSSVL DIPPVRGKAG 120 GPGMVTIDEN NASTCWEPGE DASSVGLPMV GMLGDLEPCA KFDPWMASSS SMMPEIGSMT 180 PCGGEQQGLF HKESNVPKLG CPPFRDLGIC DEDELCEGFG TGDRGFSNDN NEMFGCPQNL 240 PRYPFQEAGS DGFLTEKNFS VADSNGHIDH AVEVSSSVQH DCMTLQSSRM VGPAGAVQAL 300 NSNPDQLLLN FNGNRNVSLY FPSGNVCPNI SLSLSNLTGE SSAADYQDCG VSPMFLTGES 360 PWDSNLETGR PQARNEAKMR YNEKKKSRLF GKQIRYASRK ARADTRKRVK GRFVKAGEAY 420 DYDPLLARSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926186.1 | 0.0 | putative zinc finger protein CONSTANS-LIKE 11 isoform X1 | ||||
TrEMBL | A0A3Q0HUX2 | 0.0 | A0A3Q0HUX2_PHODC; putative zinc finger protein CONSTANS-LIKE 11 | ||||
STRING | XP_008782231.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 1e-90 | B-box type zinc finger protein with CCT domain |