PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926160.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 32800.6 Da    PI: 9.5817
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926160.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.8e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien++ rqvtfskRr+g+lKKA+EL +LCdaev  +ifsstg+ly+++s
  XP_010926160.1 10 RIENSTSRQVTFSKRRKGLLKKAKELAILCDAEVGFVIFSSTGRLYDFAS 59
                    8***********************************************86 PP
2K-box82.78.5e-28121214598
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + ++++++  + +q+e+a L+++++nLq+++R+l+Ge+L+ L++keLq+Le qLe+sl  + +kK+++l++qi+el +k   l++en +L kk+
  XP_010926160.1 121 QLNHQSSSIISFWQREAASLREQLQNLQENHRKLMGEQLSGLNVKELQNLEIQLERSLHCVQKKKEQILTDQIQELDRKGYLLHNENIELYKKV 214
                     55667888899********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.286161IPR002100Transcription factor, MADS-box
CDDcd002652.33E-42278No hitNo description
SuperFamilySSF554554.45E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-25129214IPR002487Transcription factor, K-box
PROSITE profilePS5129715.084130220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRGKIVIRR IENSTSRQVT FSKRRKGLLK KAKELAILCD AEVGFVIFSS TGRLYDFASS  60
SMKSIIDRYS RTKEENHQVL NATSEVMAFS TSRCLRLTRL IEESLCSVRV SQLQLPVCPS  120
QLNHQSSSII SFWQREAASL REQLQNLQEN HRKLMGEQLS GLNVKELQNL EIQLERSLHC  180
VQKKKEQILT DQIQELDRKG YLLHNENIEL YKKVNLIRQE NMELRKKMYA TNELNGGASK  240
DTLNPYAFSV IENSHVDVPI HLELCQPQQQ THGTQATAPK LGLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19182182MEF2C
5f28_B7e-19182182MEF2C
5f28_C7e-19182182MEF2C
5f28_D7e-19182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121383.10.0MADS-box transcription factor 23 isoform X3
SwissprotQ6EP491e-101MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3Q0HTS21e-149A0A3Q0HTS2_PHODC; MADS-box transcription factor 23-like isoform X2
STRINGXP_008782325.11e-148(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-82AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]