PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926126.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 424aa    MW: 46165.1 Da    PI: 6.1082
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926126.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26.1e-072061438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                    + C+ + + +++++C  ++ +lC  C  + H+        H+
  XP_010926126.1 20 HACDGCLRRRARWYCAADDAFLCMACDASVHSAntlalrhHR 61
                    67*****************************65777777554 PP
2CCT682.5e-23367410144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_010926126.1 367 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 410
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.7E-61764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.211764IPR000315B-box-type zinc finger
PfamPF006434.1E-52059IPR000315B-box-type zinc finger
CDDcd000211.57E-92264No hitNo description
PROSITE profilePS5101716.122367409IPR010402CCT domain
PfamPF062037.1E-18367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSHHSDELRS PGALGGKTAH ACDGCLRRRA RWYCAADDAF LCMACDASVH SANTLALRHH  60
RLRLQTSSSS PPLSSNFDDA LPPWLHGFKR RARTPRVKPS PAGPPKLEPL VPDLEADEKL  120
YAEEEHLLHR VPIFDPVLAE FFSPPAINDA DTLTDEAKPV AQLPEHAHVP APAAAAGSLA  180
GFQPSDLDLD EFAANVETLL GRGLDDGTFC IDALGLIDSA KDDDKGRVKV ELDIDAGGGS  240
DVVACNTDME IDLSTETLDI DFGRRLRGEE HEEQKVAEEA AMASGGGGGV ERAAAGRGMM  300
LRLDYEAVIA AWSCNGCSPW TDGERPQFNL DDFMMMMWSG GSVREGGGWK VAPVYGEVGM  360
AAGNGGREAR VTRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA AFPAARPAAA  420
PFTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377393RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926126.20.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2H3YQT20.0A0A2H3YQT2_PHODC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_008802436.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-69B-box type zinc finger protein with CCT domain