PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926047.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 265aa MW: 28026 Da PI: 6.9644

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926047.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.1	7.5e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+++p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q+ XP_010926047.1 4 SCNGCRVLRKGCSDNCTIRPCLqwiksSEAQANATVFLAKFYGRAGLMNLINAGPNHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWPLCQA 98 6*******************9998777889************************************************************* PP DUF260 91 kaelallke 99 ++e +l+++ XP_010926047.1 99 AVENVLRGA 107 *99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.473	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKS SEAQANATVF LAKFYGRAGL MNLINAGPNH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWPLCQAAV ENVLRGAPIA QISSDSAAAA 120 VPPTKAYDIR HVAKNSDIAE ELHKVAKPRP RFKRSGHVIK PKAMPGFIAA EPGGDDPAVV 180 CPGGSCPVEP ANRGENGSVF SVESMEWSHV SQAEPNDSGS EAEVVELDLT LGLRTAALPA 240 EEGRVEVGAQ GADACPVELG LGLIA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926047.1	0.0	LOB domain-containing protein 40
Swissprot	Q9M886	2e-77	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H3Z2H8	1e-166	A0A2H3Z2H8_PHODC; LOB domain-containing protein 40-like
STRING	XP_008807116.1	1e-168	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-73	LOB domain-containing protein 41