PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 300aa    MW: 33756.9 Da    PI: 7.7876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926026.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_010926026.1 17 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 64
                     89********************************************97 PP

2Myb_DNA-binding31.25e-1071109246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ ++eE+ l+++++     + W++Ia++++ gRt++++k++w++
   XP_010926026.1  71 GNLSPEEQFLILELHS----K-WSRIAQHLP-GRTDNEIKNYWRT 109
                      5666677776666664....6.99*******.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4731268IPR017930Myb domain
SuperFamilySSF466892.2E-2614107IPR009057Homeodomain-like
SMARTSM007171.6E-141666IPR001005SANT/Myb domain
PfamPF002491.2E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221871IPR009057Homeodomain-like
CDDcd001673.40E-121964No hitNo description
PROSITE profilePS5129412.84769115IPR017930Myb domain
SMARTSM007171.0E-669113IPR001005SANT/Myb domain
PfamPF002491.2E-870109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1872114IPR009057Homeodomain-like
CDDcd001671.06E-974109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSERRGSNKF EDMELRRGPW TLEEDTLLIH YIACHGEGRW NLLAKCSGLK RTGKSCRLRW  60
LNYLKPDIKR GNLSPEEQFL ILELHSKWSR IAQHLPGRTD NEIKNYWRTR VQKQARQLKI  120
DANSATFRDA IRCSWMPRLL EKMGSSQSMP PLIDSNATAT AGMIDQTPHG GRPPQPFSNP  180
AMQHPFENCS SYDPSSSENH SPSTSSASMA LPKLPYLSEF SSNPANSYHG FTFNPFMGGH  240
CIDHSGYGLD TMDPAPASAS QLGSSVSEYN YSMAANNCVD NIGDGLWNMD ELWYICKKAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22141154108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926024.10.0transcription factor MYB62
TrEMBLA0A2H3ZYT50.0A0A2H3ZYT5_PHODC; transcription factor MYB62-like
STRINGXP_008807088.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-74myb domain protein 62