PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 33756.9 Da PI: 7.7876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl XP_010926026.1 17 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 31.2 | 5e-10 | 71 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ ++eE+ l+++++ + W++Ia++++ gRt++++k++w++ XP_010926026.1 71 GNLSPEEQFLILELHS----K-WSRIAQHLP-GRTDNEIKNYWRT 109 5666677776666664....6.99*******.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.473 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.2E-26 | 14 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.40E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 12.847 | 69 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-6 | 69 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-8 | 70 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 72 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 74 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSERRGSNKF EDMELRRGPW TLEEDTLLIH YIACHGEGRW NLLAKCSGLK RTGKSCRLRW 60 LNYLKPDIKR GNLSPEEQFL ILELHSKWSR IAQHLPGRTD NEIKNYWRTR VQKQARQLKI 120 DANSATFRDA IRCSWMPRLL EKMGSSQSMP PLIDSNATAT AGMIDQTPHG GRPPQPFSNP 180 AMQHPFENCS SYDPSSSENH SPSTSSASMA LPKLPYLSEF SSNPANSYHG FTFNPFMGGH 240 CIDHSGYGLD TMDPAPASAS QLGSSVSEYN YSMAANNCVD NIGDGLWNMD ELWYICKKAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-22 | 14 | 115 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926024.1 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | A0A2H3ZYT5 | 0.0 | A0A2H3ZYT5_PHODC; transcription factor MYB62-like | ||||
STRING | XP_008807088.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 6e-74 | myb domain protein 62 |