PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 304aa    MW: 34270.5 Da    PI: 8.0181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926024.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_010926024.1 17 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 64
                     89********************************************97 PP

2Myb_DNA-binding51.13.1e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010926024.1  70 RGNLSPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 113
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0521264IPR017930Myb domain
SuperFamilySSF466891.2E-3014111IPR009057Homeodomain-like
SMARTSM007171.6E-141666IPR001005SANT/Myb domain
PfamPF002491.2E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221871IPR009057Homeodomain-like
CDDcd001675.43E-121964No hitNo description
PROSITE profilePS5129424.80265119IPR017930Myb domain
SMARTSM007178.2E-1569117IPR001005SANT/Myb domain
PfamPF002494.2E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2372118IPR009057Homeodomain-like
CDDcd001673.19E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSERRGSNKF EDMELRRGPW TLEEDTLLIH YIACHGEGRW NLLAKCSGLK RTGKSCRLRW  60
LNYLKPDIKR GNLSPEEQFL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY WRTRVQKQAR  120
QLKIDANSAT FRDAIRCSWM PRLLEKMGSS QSMPPLIDSN ATATAGMIDQ TPHGGRPPQP  180
FSNPAMQHPF ENCSSYDPSS SENHSPSTSS ASMALPKLPY LSEFSSNPAN SYHGFTFNPF  240
MGGHCIDHSG YGLDTMDPAP ASASQLGSSV SEYNYSMAAN NCVDNIGDGL WNMDELWYIC  300
KKAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141194108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926024.10.0transcription factor MYB62
SwissprotQ9C9G74e-80MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2H3ZYT50.0A0A2H3ZYT5_PHODC; transcription factor MYB62-like
STRINGXP_008807088.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-80myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]