PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925960.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 171aa MW: 19381.3 Da PI: 7.0714

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925960.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+C++l rkC+++C+lapyfp+++p+kfa vhk+FGasnv+kll ++e +reda++s+vyeA+ar+rdPvyG++ i+ lq+ +e lk +l+ XP_010925960.1 12 PCAGCRTLHRKCSHNCMLAPYFPSDEPEKFASVHKVFGASNVIKLLLMVEEGRREDAVKSMVYEAHARLRDPVYGCTTAISYLQKCVEDLKGQLK 106 7********************************************************************************************** PP DUF260 96 llkee 100 +++++ XP_010925960.1 107 TTRQQ 111 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.217	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDSSVRARPD LPCAGCRTLH RKCSHNCMLA PYFPSDEPEK FASVHKVFGA SNVIKLLLMV 60 EEGRREDAVK SMVYEAHARL RDPVYGCTTA ISYLQKCVED LKGQLKTTRQ QVLESQEQRD 120 RLLRILMDDP YLKPTYLPAG TTVCGGGSSF MFDNMMHDDH FGSFADNWPM I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	12	113	11	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	12	113	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925960.1	1e-128	LOB domain-containing protein 25-like
Swissprot	Q9LQR0	3e-39	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2H3XCN2	1e-110	A0A2H3XCN2_PHODC; LOB domain-containing protein 25-like
STRING	XP_008781832.1	1e-111	(Phoenix dactylifera)
STRING	XP_008781843.1	1e-111	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-41	LOB domain-containing protein 1