PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925954.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 660aa    MW: 73627.7 Da    PI: 6.2975
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925954.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23115215198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +++a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_010925954.1 115 FCKILTASDTSTHGGFSVLRRHATEClppldMSQPTPTQELAAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGESG 207
                     99*****************************77777888*************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_010925954.1 208 ELRVGVRR 215
                     9*****98 PP
2Auxin_resp97.71.7e-32241320183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr   s+F+v v+k ++a+k+ ++vGmRfkm+fe ed +e+r++Gt+vgv d+++ +W +SkWrsLk
  XP_010925954.1 241 ASHAISTGTLFVVYYKPRI--SQFIVGVNKCLEAVKHGFTVGMRFKMRFECEDIPEKRFTGTIVGVGDVSS-QWAGSKWRSLK 320
                     789***************8..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-40101244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-38108230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-19114215No hitNo description
PROSITE profilePS5086311.815115217IPR003340B3 DNA binding domain
PfamPF023621.4E-21115215IPR003340B3 DNA binding domain
SMARTSM010192.1E-21115217IPR003340B3 DNA binding domain
PfamPF065073.8E-30241320IPR010525Auxin response factor
PfamPF023091.7E-8504593IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-12553633No hitNo description
PROSITE profilePS5174528.475557649IPR000270PB1 domain
PfamPF023096.6E-6603647IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MEAGSQGVDL YKELWKLCAG PLVEVPRENE RVFYFPQGHM EQLEASTNQE LDLQIPRLSL  60
PSNILCRVVN VQLKAEPETD EVYAQVTLQP ELDQGEPANL DSTLLEPPRP RVQSFCKILT  120
ASDTSTHGGF SVLRRHATEC LPPLDMSQPT PTQELAAKDL HGFEWRFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDAFV FLRGESGELR VGVRRLAKQQ SMVPSSLISS QSMHLGVLAT  240
ASHAISTGTL FVVYYKPRIS QFIVGVNKCL EAVKHGFTVG MRFKMRFECE DIPEKRFTGT  300
IVGVGDVSSQ WAGSKWRSLK VQWDEATSII RPDRISPWEI EPFDAPAPAL NASQPVFAKN  360
KRPRQSMDIV DHPVLETTPP FWFSGKTQSH DLAALSSVDA NNSETQVILP CLQKGDKEDG  420
VKNGPSPCEP VALDGRLKDF NSPTKRPPSS LTDVSLQLFQ DMNDEATVTS LASDVQEWKK  480
PEVGSSSYRL FGIDLMNHSK STVIAEKAVA PPVVGVSVAP VEESDRQFGL SKASKEQKQG  540
LDSSPKEMQS RQHGSTRSRI KVHMQGMAVG RAVDLTNLQG YSELTTELEQ MFDIKGELRQ  600
PNKWEVVFTD DEGDMMLVGD DPWLEFCKMV RKIFIYTSEE VKKMKPRSKL SSPSIEAEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701034519357Auxin response factor 1
4ldw_A1e-1701034519357Auxin response factor 1
4ldw_B1e-1701034519357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925954.10.0auxin response factor 18
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2H3Z3W00.0A0A2H3Z3W0_PHODC; Auxin response factor
STRINGXP_008808096.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]