PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | CPP | ||||||||
Protein Properties | Length: 505aa MW: 55902.1 Da PI: 7.0672 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41.7 | 2.3e-13 | 80 | 119 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ XP_010925877.1 80 KQKQCNCKNSRCLKLYCECFASGLYCDG-CNCVNCCNNVEN 119 89**************************.********9875 PP | |||||||
2 | TCR | 51.7 | 1.7e-16 | 164 | 203 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e XP_010925877.1 164 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCIDCKNYE 203 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.2E-14 | 79 | 119 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.96 | 80 | 204 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.1E-10 | 81 | 116 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-20 | 164 | 205 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.3E-13 | 167 | 202 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MEQGIKSAAP IPSDFPPKKL ARQLDFTAAH CESAGAGALE QQSPLPLPVS RPSIQTSVKL 60 GSPRSRPLPI FEAKDGTPKK QKQCNCKNSR CLKLYCECFA SGLYCDGCNC VNCCNNVENE 120 AARQEAVEAT LERNPNAFRP KIDNSPHANR DSREEAGEPP LVGKHNKGCH CKKSGCLKKY 180 CECFQANILC SDNCKCIDCK NYEGSEERRA LFHSEQGISH SYIQQAANAA LNGAIGSSGF 240 GSPPAFKKRK TQELFLPPTV KDQSILRLQQ FPQANHIKTC APASSFASTT VAHAINPIQA 300 GSWKVTYRSP LVDIVQPEDV KELCKLLIMV SREAAKTFAD QKACEENPAH AEDQTDCSLA 360 SWNQDMDASQ REPDVQKEPV DDCSNGTDMD RANVELSESD HVDVHEGSKP MSPGTLALMC 420 DEQDTIFMTF QNNSTSSRFL SNQNVSEVYV EQERCVLMGL RDRLRWLINC GKIKGKPNYS 480 GVLNRSDYMD VHHLIINKHS TRQWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-32 | 72 | 213 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 8e-32 | 72 | 213 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925877.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-150 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2H3YMN4 | 0.0 | A0A2H3YMN4_PHODC; protein tesmin/TSO1-like CXC 5 | ||||
STRING | XP_008800911.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-140 | Tesmin/TSO1-like CXC domain-containing protein |