PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 975aa MW: 107535 Da PI: 4.9213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.5e-11 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 v+++G++ W+tIa+ ++ gR +kqc++rw+++l XP_010925865.1 2 VNKHGPKKWSTIAQALN-GRIGKQCRERWHNHL 33 99***************.*************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 39 | 81 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+ E+ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_010925865.1 39 KQAWTQKEEIALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 81 799*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.01E-8 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 16.55 | 1 | 33 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 1 | 41 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.26 | 1 | 35 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.82E-26 | 13 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.726 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 39 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-10 | 41 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 42 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 975 aa Download sequence Send to blast |
MVNKHGPKKW STIAQALNGR IGKQCRERWH NHLNPAINKQ AWTQKEEIAL IHAHQIYGNK 60 WAELTKFLPG RTDNAIKNHW NSSVKKKLDS YLASGLLAQF QGLPHAENPA QCISSSVVNQ 120 QNSEDSRIKD RQEVEDSSEC SKESSSALVG CSQSDYELAI TVRDDIQLAE AAKKKDIHDS 180 QLSMCSKDYY ASMEEIECIV PETQCEPMVS VTAPCQNLHE IEISGRLANQ MVSQELPNSL 240 LEAAQRSPEL KRTSEYHKNK SLLFPDSGGP KMATCITNSG VESENHNKIS MAEADCCSGS 300 VFGAEMHEDV TMENPITAPN IINMDYYLGS GSSQPDFYGS LAYRNLISCS QPQYPANSSD 360 MLGNSYCQGL MTVVPPSYIC PDDGKPICRS DDAVTRDISV GTQYSELITC MYDGFAYSNC 420 SSLSPSGGSR SKIFVPEDQH KENETPVQTY MAMMDSEPPN AMDNITSSDE NPAIQTEEHP 480 DAGALFYEPP RFPSLEIPFV SCDLISSGDL QQAYSPLGIR QLMMSSTSCS LWDSPSHDES 540 PDALLKSAAK SFICTPSIMK KRQRELLSPL QERRIDKKSG IDTDRVLFST PSISRTDNFS 600 MGIMNDEGVA PRISSCSSEA NALYPSNHQK KKHEICLEQK ENLDCTPSYQ KDEDALVEAK 660 ARISSNESKS SFYQAKKEQC TTAISAPTNL HANVTENEPP AGVLVEHNTN DMLLFSTDQD 720 GHPVNGQIRT AARSLEDQTF RSFEISPNKG HSDARSEALS DLSGPLSPRV GESMQEQQQV 780 PVTSAQCALS VHPLEVSVEK HGSLIDMDLE NLNISFADTP GIKRGIESPS AWKSPWFMNS 840 LLPGHRIDTD ITFEDIGYFV SPGDRSYDAI GLMRQLSEHT ASAVAEAQEV LASGSPGVDF 900 DKRHSGKENF QKENIQSDKE LGDHPLTPKV MMEARILDFN ACATPVRKTE NKKIGNIGTS 960 VNFSSTSSYL MKGYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-38 | 1 | 90 | 21 | 110 | B-MYB |
1mse_C | 3e-38 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-38 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925862.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_010925863.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_010925864.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A2H3ZVS8 | 0.0 | A0A2H3ZVS8_PHODC; transcription factor MYB3R-1-like | ||||
STRING | XP_008800072.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-109 | myb domain protein 3r-4 |