PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 975aa    MW: 107535 Da    PI: 4.9213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925865.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.5e-112331648
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     v+++G++ W+tIa+ ++ gR +kqc++rw+++l
   XP_010925865.1  2 VNKHGPKKWSTIAQALN-GRIGKQCRERWHNHL 33
                     99***************.*************97 PP

2Myb_DNA-binding44.73.1e-143981145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++WT+ E+  l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_010925865.1 39 KQAWTQKEEIALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 81
                     799*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.01E-8133No hitNo description
PROSITE profilePS5129416.55133IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-17141IPR009057Homeodomain-like
SMARTSM007170.26135IPR001005SANT/Myb domain
PfamPF002495.4E-9233IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-261389IPR009057Homeodomain-like
PROSITE profilePS5129422.7263488IPR017930Myb domain
SMARTSM007172.7E-133886IPR001005SANT/Myb domain
PfamPF002492.4E-123982IPR001005SANT/Myb domain
CDDcd001673.20E-104181No hitNo description
Gene3DG3DSA:1.10.10.603.0E-204288IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MVNKHGPKKW STIAQALNGR IGKQCRERWH NHLNPAINKQ AWTQKEEIAL IHAHQIYGNK  60
WAELTKFLPG RTDNAIKNHW NSSVKKKLDS YLASGLLAQF QGLPHAENPA QCISSSVVNQ  120
QNSEDSRIKD RQEVEDSSEC SKESSSALVG CSQSDYELAI TVRDDIQLAE AAKKKDIHDS  180
QLSMCSKDYY ASMEEIECIV PETQCEPMVS VTAPCQNLHE IEISGRLANQ MVSQELPNSL  240
LEAAQRSPEL KRTSEYHKNK SLLFPDSGGP KMATCITNSG VESENHNKIS MAEADCCSGS  300
VFGAEMHEDV TMENPITAPN IINMDYYLGS GSSQPDFYGS LAYRNLISCS QPQYPANSSD  360
MLGNSYCQGL MTVVPPSYIC PDDGKPICRS DDAVTRDISV GTQYSELITC MYDGFAYSNC  420
SSLSPSGGSR SKIFVPEDQH KENETPVQTY MAMMDSEPPN AMDNITSSDE NPAIQTEEHP  480
DAGALFYEPP RFPSLEIPFV SCDLISSGDL QQAYSPLGIR QLMMSSTSCS LWDSPSHDES  540
PDALLKSAAK SFICTPSIMK KRQRELLSPL QERRIDKKSG IDTDRVLFST PSISRTDNFS  600
MGIMNDEGVA PRISSCSSEA NALYPSNHQK KKHEICLEQK ENLDCTPSYQ KDEDALVEAK  660
ARISSNESKS SFYQAKKEQC TTAISAPTNL HANVTENEPP AGVLVEHNTN DMLLFSTDQD  720
GHPVNGQIRT AARSLEDQTF RSFEISPNKG HSDARSEALS DLSGPLSPRV GESMQEQQQV  780
PVTSAQCALS VHPLEVSVEK HGSLIDMDLE NLNISFADTP GIKRGIESPS AWKSPWFMNS  840
LLPGHRIDTD ITFEDIGYFV SPGDRSYDAI GLMRQLSEHT ASAVAEAQEV LASGSPGVDF  900
DKRHSGKENF QKENIQSDKE LGDHPLTPKV MMEARILDFN ACATPVRKTE NKKIGNIGTS  960
VNFSSTSSYL MKGYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3819021110B-MYB
1mse_C3e-3818818105C-Myb DNA-Binding Domain
1msf_C3e-3818818105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925862.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_010925863.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_010925864.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A2H3ZVS80.0A0A2H3ZVS8_PHODC; transcription factor MYB3R-1-like
STRINGXP_008800072.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-109myb domain protein 3r-4