PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 1094aa MW: 120946 Da PI: 5.0792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 54 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd +l av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l XP_010925862.1 54 RGQWTSEEDAILQTAVQEFKGKNWKKIAECFP-DRTDVQCLHRWQKVL 100 89******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.3 | 9.9e-20 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde++++ v+++G++ W+tIa+ ++ gR +kqc++rw+++l XP_010925862.1 106 KGPWTKEEDEKIIEMVNKHGPKKWSTIAQALN-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 44.5 | 3.6e-14 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+ E+ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_010925862.1 158 KQAWTQKEEIALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 200 799*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.711 | 49 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 54 | 100 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.16E-15 | 55 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 55 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-13 | 57 | 100 | No hit | No description |
PROSITE profile | PS51294 | 31.9 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 103 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-18 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-18 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-16 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 112 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 157 | 205 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.57 | 157 | 207 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-12 | 158 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-10 | 160 | 200 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 161 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1094 aa Download sequence Send to blast |
MMASDWGKGA NKGETSASAS TSASNAVQDV CGDEIQRRRP LHGRTTGPTR RSTRGQWTSE 60 EDAILQTAVQ EFKGKNWKKI AECFPDRTDV QCLHRWQKVL NPELVKGPWT KEEDEKIIEM 120 VNKHGPKKWS TIAQALNGRI GKQCRERWHN HLNPAINKQA WTQKEEIALI HAHQIYGNKW 180 AELTKFLPGR TDNAIKNHWN SSVKKKLDSY LASGLLAQFQ GLPHAENPAQ CISSSVVNQQ 240 NSEDSRIKDR QEVEDSSECS KESSSALVGC SQSDYELAIT VRDDIQLAEA AKKKDIHDSQ 300 LSMCSKDYYA SMEEIECIVP ETQCEPMVSV TAPCQNLHEI EISGRLANQM VSQELPNSLL 360 EAAQRSPELK RTSEYHKNKS LLFPDSGGPK MATCITNSGV ESENHNKISM AEADCCSGSV 420 FGAEMHEDVT MENPITAPNI INMDYYLGSG SSQPDFYGSL AYRNLISCSQ PQYPANSSDM 480 LGNSYCQGLM TVVPPSYICP DDGKPICRSD DAVTRDISVG TQYSELITCM YDGFAYSNCS 540 SLSPSGGSRS KIFVPEDQHK ENETPVQTYM AMMDSEPPNA MDNITSSDEN PAIQTEEHPD 600 AGALFYEPPR FPSLEIPFVS CDLISSGDLQ QAYSPLGIRQ LMMSSTSCSL WDSPSHDESP 660 DALLKSAAKS FICTPSIMKK RQRELLSPLQ ERRIDKKSGI DTDRVLFSTP SISRTDNFSM 720 GIMNDEGVAP RISSCSSEAN ALYPSNHQKK KHEICLEQKE NLDCTPSYQK DEDALVEAKA 780 RISSNESKSS FYQAKKEQCT TAISAPTNLH ANVTENEPPA GVLVEHNTND MLLFSTDQDG 840 HPVNGQIRTA ARSLEDQTFR SFEISPNKGH SDARSEALSD LSGPLSPRVG ESMQEQQQVP 900 VTSAQCALSV HPLEVSVEKH GSLIDMDLEN LNISFADTPG IKRGIESPSA WKSPWFMNSL 960 LPGHRIDTDI TFEDIGYFVS PGDRSYDAIG LMRQLSEHTA SAVAEAQEVL ASGSPGVDFD 1020 KRHSGKENFQ KENIQSDKEL GDHPLTPKVM MEARILDFNA CATPVRKTEN KKIGNIGTSV 1080 NFSSTSSYLM KGYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-67 | 54 | 207 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-67 | 54 | 207 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925862.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_010925863.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_010925864.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A2H3ZVS8 | 0.0 | A0A2H3ZVS8_PHODC; transcription factor MYB3R-1-like | ||||
STRING | XP_008800072.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-152 | myb domain protein 3r-4 |