PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 201aa MW: 23114.7 Da PI: 6.2484 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl XP_010925788.1 22 KGPWTKEEDLILINYIANHGEGAWNNLARSAGLNRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d+++++G++ W++Ia+ ++ gRt+ ++k++w++ XP_010925788.1 75 RGNITPEEQLLIMDLHARWGNR-WSKIAKQLP-GRTDHEIKNYWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 15 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.512 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-30 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.197 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-10 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MVEEANGMDK RINSSQEAEV RKGPWTKEED LILINYIANH GEGAWNNLAR SAGLNRTGKS 60 CRLRWLNYLR PDVRRGNITP EEQLLIMDLH ARWGNRWSKI AKQLPGRTDH EIKNYWRTRI 120 QKRVEHGESF DYHQAMVIDE ASASTITSQT NSVEDIGPQP SYIERQAPNP DAFAPHFSST 180 ECSNNFWSVE DLWSMQSLSG D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 19 | 124 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925788.1 | 1e-150 | myb-related protein 305-like | ||||
Swissprot | P81391 | 2e-82 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2H3YLY2 | 1e-119 | A0A2H3YLY2_PHODC; myb-related protein 305-like | ||||
STRING | XP_008800726.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-75 | myb domain protein 21 |
Publications ? help Back to Top | |||
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