PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 564aa MW: 59821.6 Da PI: 7.3376 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.2e-36 | 206 | 299 | 2 | 92 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssgkaa 91 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el+g+++s++s+ ++++ + n+ g+++ XP_010925688.1 206 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIRNAQAAIDELAGLPASASSSNppsalNPQETAAA--NQPVGDSS 298 79**************************************************************666664332222111111111..22222333 PP TCP 92 k 92 k XP_010925688.1 299 K 299 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-32 | 206 | 288 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.467 | 208 | 266 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MTLWPVIVVS PSRGGGDGDG ILGVGWPSLL EAETRKAPTP APPDTTSRAA EGTREAARGS 60 RERGIPLAAN TKLDGRQKRA AKDLDPRRTP YRPIPNPRGS EREEEEGEQP QEEEQQPQRF 120 RLRPLHHHQN PPPGDRSYFP SPSSSSSSSP TTASFSDHAR PSDRMAEAEG HGYGHQRQHQ 180 RPRFVGGLRG AGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ 240 DRLGYDRPSK AVDWLIRNAQ AAIDELAGLP ASASSSNPPS ALNPQETAAA NQPVGDSSKK 300 PIPGAEPVAS AAFGFGGGGG GGGGSGSFLP PSLDSDAIAD TIKSFFPMAA PAATAPSSSP 360 AIGFQNYPSD LASHASRQDL QLSLQSFQDP IFHSPDPSHH PHSQHHHQDP TPSTQHALFS 420 VSAHLAYDTA SAGWSEQSQR MVPWNVAETS CGGGGGGGGY EFNVPPPAPP QAVPLHPVLG 480 QSQFFTQRGP LQSSNSPAIR AWADPIASTT DHQMHPALRP SVSSIGFASG AGFPGFRFPA 540 RIQGEEERDG TSDKPPSASS ASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 213 | 266 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 213 | 266 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925688.1 | 0.0 | transcription factor TCP4 isoform X1 | ||||
Swissprot | Q8LPR5 | 1e-88 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2H3ZQR1 | 0.0 | A0A2H3ZQR1_PHODC; transcription factor PCF5-like | ||||
STRING | XP_008784441.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-41 | TCP family protein |