PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 568aa MW: 60279.1 Da PI: 7.3376 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.2e-36 | 210 | 303 | 2 | 92 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssgkaa 91 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el+g+++s++s+ ++++ + n+ g+++ XP_010925687.1 210 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIRNAQAAIDELAGLPASASSSNppsalNPQETAAA--NQPVGDSS 302 79**************************************************************666664332222111111111..22222333 PP TCP 92 k 92 k XP_010925687.1 303 K 303 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-32 | 210 | 292 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.467 | 212 | 270 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MEVTKTLWPV IVVSPSRGGG DGDGILGVGW PSLLEAETRK APTPAPPDTT SRAAEGTREA 60 ARGSRERGIP LAANTKLDGR QKRAAKDLDP RRTPYRPIPN PRGSEREEEE GEQPQEEEQQ 120 PQRFRLRPLH HHQNPPPGDR SYFPSPSSSS SSSPTTASFS DHARPSDRMA EAEGHGYGHQ 180 RQHQRPRFVG GLRGAGEIVE VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF 240 YDVQDRLGYD RPSKAVDWLI RNAQAAIDEL AGLPASASSS NPPSALNPQE TAAANQPVGD 300 SSKKPIPGAE PVASAAFGFG GGGGGGGGSG SFLPPSLDSD AIADTIKSFF PMAAPAATAP 360 SSSPAIGFQN YPSDLASHAS RQDLQLSLQS FQDPIFHSPD PSHHPHSQHH HQDPTPSTQH 420 ALFSVSAHLA YDTASAGWSE QSQRMVPWNV AETSCGGGGG GGGYEFNVPP PAPPQAVPLH 480 PVLGQSQFFT QRGPLQSSNS PAIRAWADPI ASTTDHQMHP ALRPSVSSIG FASGAGFPGF 540 RFPARIQGEE ERDGTSDKPP SASSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 217 | 270 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 217 | 270 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925688.1 | 0.0 | transcription factor TCP4 isoform X1 | ||||
Swissprot | Q8LPR5 | 2e-88 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2H3ZQR1 | 0.0 | A0A2H3ZQR1_PHODC; transcription factor PCF5-like | ||||
STRING | XP_008784441.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-41 | TCP family protein |