PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 349aa    MW: 37555 Da    PI: 7.666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925548.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
   XP_010925548.1 107 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 151
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.823100156IPR017930Myb domain
SuperFamilySSF466897.9E-17102157IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-19103155IPR006447Myb domain, plants
SMARTSM007173.3E-11104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-12104150IPR009057Homeodomain-like
CDDcd001671.95E-9107152No hitNo description
PfamPF002498.5E-11107151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RAGGVRLFGV RLTEGAGSMK KSASMSSLYS ASSSATGGGA  60
GGGGSTNPGS PSSDPLRDNP AAAGYASDNA AQASCSNCRN ERKKGVPWTE EEHRMFLLGL  120
QKLGKGDWRG IARNFVVSRT PTQVASHAQK YFIRQTNASR RKRRSSLFDM VPDMPTDQIP  180
VLEEHLMHGS PPNEPENTNQ LPALNHGPDQ GSELAEPLLN NPPEELNESI PYNNTPMPAV  240
PAFYPAFIHL PYAFWPPNLA APATEEEMGE THEIVKPRPV IPKEPVNMDE ITGMSKLSIG  300
EHGAGRMEPS ALSLKLLEAS TSRQSAFHLN PSSTRPDLSQ GSSNAIHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925548.10.0transcription factor MYBS3
SwissprotQ7XC574e-96MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2H3Y6F00.0A0A2H3Y6F0_PHODC; transcription factor MYBS3-like isoform X1
STRINGXP_008794113.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-75MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]