PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925547.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 339aa    MW: 37090.2 Da    PI: 9.4217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925547.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-164491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde l++ v++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_010925547.1 44 RGPWTREEDEVLAKFVRKEGEGRWRTLPHRAGLLRCGKSCRLRWMNYL 91
                     89******************************99************97 PP

2Myb_DNA-binding47.64e-1597142148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010925547.1  97 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 142
                      566679****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4063991IPR017930Myb domain
SuperFamilySSF466899.17E-2941138IPR009057Homeodomain-like
SMARTSM007173.7E-124393IPR001005SANT/Myb domain
PfamPF002494.6E-144491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-214598IPR009057Homeodomain-like
CDDcd001672.06E-104691No hitNo description
PROSITE profilePS5129425.16492146IPR017930Myb domain
SMARTSM007172.7E-1496144IPR001005SANT/Myb domain
PfamPF002497.2E-1498142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2499147IPR009057Homeodomain-like
CDDcd001671.20E-11102142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRNPSSTSGP GPSSSLSSPA TGSRSVTKQR QKGAPTASKM GVKRGPWTRE EDEVLAKFVR  60
KEGEGRWRTL PHRAGLLRCG KSCRLRWMNY LRPSIKRGPI APDEEDLILR LHRLLGNRWS  120
LIAGRIPGRT DNEIKNYWNT HLSKKLISQG IDPRTHKPLT SSSSPNPDPP LPEGPKIFQP  180
PARIPYRNPN PNPNANPGST IPSVHQQMSG GHGGVGTHRG RDGFSGSVSL EQDDGWQNME  240
GFPAMDLQGS QGEGDTGEDD VLSSFLDSLI NDDIFLQNPQ QNVNYNDDDN FNNGQIQSHD  300
PRMSSAPGFG VGTLGESTLT SPVIQDKETH GKFVDHAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-26441464105C-Myb DNA-Binding Domain
1msf_C7e-26441464105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925547.10.0transcription repressor MYB5
SwissprotQ388504e-78MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2H3Y0H21e-167A0A2H3Y0H2_PHODC; transcription repressor MYB5-like
STRINGXP_008791485.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-75myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]