PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 439aa MW: 49719.4 Da PI: 7.7509 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.3 | 6.4e-36 | 46 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd+el+ e+L++kv+g++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_010925511.1 46 LPAGVKFDPTDQELI-EHLEAKVKGEEsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdlqRG 138 799************.99********97776553333333666646**********.555666799******************75555554433 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_010925511.1 139 ETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188 788************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-37 | 41 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.506 | 46 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-16 | 47 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MNRSNIGSVS SSDLIDAKLE EHRMCGSKQC PSCGHKLDRK PDWVGLPAGV KFDPTDQELI 60 EHLEAKVKGE ESRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQRGET RWHKTGKTRP VMVNGRQKGC KKILVLYTNF GKHRKPEKTN 180 WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNWSDRSA AAAAGEGVRD RRRDSGSGSC 240 SSKEVVSQRD ELNSRAGISG YGALDIQQNM KPDNFSFAPF RKSFDEVGMG EAAPKAREEH 300 EEAEHHHALP QHQHHVTQKQ QHQQAAPTAA FHVSRPTNPI STIISPPPLH QTSVVLNDPY 360 HVSRLLLQAD KFQQQHQQQQ HQQLQQHQKL DHRSASGLEE LIMGCTSAGI RGETSVPHSQ 420 ETEWAPYTYW SPDNPDHHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 44 | 188 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925507.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_010925508.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_010925509.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-169 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2H3Y6A5 | 0.0 | A0A2H3Y6A5_PHODC; NAC domain-containing protein 75-like isoform X1 | ||||
TrEMBL | A0A2H3Y6M5 | 0.0 | A0A2H3Y6M5_PHODC; NAC domain-containing protein 75-like isoform X2 | ||||
STRING | XP_008794089.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-129 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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