PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925509.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 439aa    MW: 49719.4 Da    PI: 7.7509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925509.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.36.4e-36461881128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 
                     lp+G++F+Ptd+el+ e+L++kv+g++      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  XP_010925509.1  46 LPAGVKFDPTDQELI-EHLEAKVKGEEsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdlqRG 138
                     799************.99********97776553333333666646**********.555666799******************75555554433 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010925509.1 139 ETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                     788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3741207IPR003441NAC domain
PROSITE profilePS5100532.50646207IPR003441NAC domain
PfamPF023652.6E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNRSNIGSVS SSDLIDAKLE EHRMCGSKQC PSCGHKLDRK PDWVGLPAGV KFDPTDQELI  60
EHLEAKVKGE ESRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQRGET RWHKTGKTRP VMVNGRQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNWSDRSA AAAAGEGVRD RRRDSGSGSC  240
SSKEVVSQRD ELNSRAGISG YGALDIQQNM KPDNFSFAPF RKSFDEVGMG EAAPKAREEH  300
EEAEHHHALP QHQHHVTQKQ QHQQAAPTAA FHVSRPTNPI STIISPPPLH QTSVVLNDPY  360
HVSRLLLQAD KFQQQHQQQQ HQQLQQHQKL DHRSASGLEE LIMGCTSAGI RGETSVPHSQ  420
ETEWAPYTYW SPDNPDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-124418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925507.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_010925508.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_010925509.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-169NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2H3Y6A50.0A0A2H3Y6A5_PHODC; NAC domain-containing protein 75-like isoform X1
TrEMBLA0A2H3Y6M50.0A0A2H3Y6M5_PHODC; NAC domain-containing protein 75-like isoform X2
STRINGXP_008794089.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-129NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]