PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925502.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 283aa    MW: 30862.5 Da    PI: 8.0624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925502.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + +++G+g +W + +++ g++R++k+c++rw++yl
   XP_010925502.1 14 RGPWSPEEDMTLKSYLERHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.75.6e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + ++ G++ W+ Ia+ +  gRt++++k++w++
   XP_010925502.1  69 GGFTEEEDIIICTLYNKIGSR-WSVIASQLR-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.058962IPR017930Myb domain
SuperFamilySSF466894.3E-2711109IPR009057Homeodomain-like
SMARTSM007174.4E-111364IPR001005SANT/Myb domain
PfamPF002496.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001671.71E-81662No hitNo description
PROSITE profilePS5129419.65863117IPR017930Myb domain
SMARTSM007175.8E-1267115IPR001005SANT/Myb domain
PfamPF002491.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
CDDcd001671.92E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRAPCCDRA NVKRGPWSPE EDMTLKSYLE RHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDIIIC TLYNKIGSRW SVIASQLRGR TDNDVKNYWN TKLKKKMMAA  120
QASHYKNITS SSSGTTTTPN TNLIHHTPAP ASLIIPTIKT EIYTCDNFLA PSNEGPSASA  180
PVNPCFMFGH NTPFPPAGLV GPPVLNGNAG HYAVSPHDDA STASSSVTIE NSSNNYVNWS  240
ANGPGGDDAF FAEFFNDNYG YQEKTGEGAP NQATVAANVW ITF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925502.10.0transcription factor RAX2
TrEMBLA0A2H3Y6B91e-163A0A2H3Y6B9_PHODC; transcription factor RAX2-like
STRINGXP_008794081.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-72myb domain protein 36