PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 469aa MW: 52432.9 Da PI: 6.3001 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2e-08 | 395 | 432 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F++ ++yp+ +e+ LA k gLt +qV++WF N R + XP_010925492.1 395 FHNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 432 776679******************************88 PP | |||||||
2 | BELL | 67.3 | 3e-22 | 267 | 336 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 qe+ kk+ L ++l+ Vd+rY+q+ eq++ vis F +++ g++++++ +Al+ai +++L+++i++qi XP_010925492.1 267 QEVYTKKTELATMLHLVDQRYNQCIEQIHNVISTFYSATESGTSHMHALFALRAIFSLYKNLRERITSQI 336 68889****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-9 | 183 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 2.6E-26 | 191 | 333 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.386 | 373 | 436 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-26 | 375 | 449 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.95E-15 | 376 | 444 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.5E-5 | 376 | 440 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.53E-11 | 376 | 437 | No hit | No description |
Pfam | PF05920 | 4.0E-14 | 393 | 432 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MVVESAFPHM FSDPVIQLSF PGYNNHRQIM ASDPFLSTFQ EAQEEALSNL YVANNGDMVN 60 GNVPYSRNMP HVGNVSYDGS SGNADLGEHF MGTSLPATSL VNLVSGTTCL RENLISVDAA 120 STSSLPSKEM RTSISSDCCN TINSSKTVSV NCEFELQDDA GLLTSKKDAC LNQQLNCSWN 180 YDVLGPEVPS GSRYLHVMQQ ILAEVATYAV ADSNEMNSDS FGGIGGEEKM TFSSGCSNLR 240 ELAMSDEFPF SSGEIKSQGH VDGQRCQEVY TKKTELATML HLVDQRYNQC IEQIHNVIST 300 FYSATESGTS HMHALFALRA IFSLYKNLRE RITSQILVIA QQCSTLCMRE EKSFGSSLIQ 360 KQLALQQLRS HHQQSWRPQR GLPEKSVSVL RAWMFHNFLH PYPKDNEKHL LAIKSGLTRS 420 QVSNWFINAR VRLWKPMIEE MYSELKRKNQ PEGSDGESRV HGNIGSQWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-14 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-14 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-14 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-14 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 3e-14 | 382 | 440 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-14 | 382 | 440 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915336.1 | 0.0 | BEL1-like homeodomain protein 3 isoform X3 | ||||
Swissprot | P48731 | 2e-73 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2H4A047 | 0.0 | A0A2H4A047_PHODC; homeobox protein ATH1-like | ||||
STRING | XP_008811733.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3143 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 9e-76 | homeobox gene 1 |
Publications ? help Back to Top | |||
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