PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 150aa MW: 16654.8 Da PI: 8.5202 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.1 | 1.9e-13 | 23 | 110 | 12 | 98 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.aaavtrtdifdflvdivpr 98 +++++ + +lP+ r+kki+k d ++k++ +ea l+s + +lf+ l+ + a +krrt+k + +aa ++ + dfl+d pr XP_010925346.1 23 ESSEVLRPSLPMGRVKKIVKLDREIKKVNSEALFLISLSTDLFLRSLASSARDAALLSKRRTIKLDHLrSAACSHPPTSDFLLDSLPR 110 566778889*******************************************************9999346788999********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-15 | 24 | 113 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-14 | 31 | 93 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.5E-18 | 32 | 110 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEDQEDRRQG QEEQGEEGEE EGESSEVLRP SLPMGRVKKI VKLDREIKKV NSEALFLISL 60 STDLFLRSLA SSARDAALLS KRRTIKLDHL RSAACSHPPT SDFLLDSLPR PSPPSKPAAR 120 PRPAAASEKP LPPGARRIDD FFRKPTADSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925346.1 | 1e-101 | chromatin accessibility complex protein 1 | ||||
Refseq | XP_010925347.1 | 1e-101 | chromatin accessibility complex protein 1 | ||||
TrEMBL | A0A2H3XNS7 | 5e-61 | A0A2H3XNS7_PHODC; uncharacterized protein LOC103704877 | ||||
STRING | XP_008786575.1 | 8e-62 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-26 | nuclear factor Y, subunit C13 |