PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924994.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 347aa MW: 38243.1 Da PI: 5.3124

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924994.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.8e-40	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lapyfpa+q+++f n+h+lFG+sn+lk++++l++ +r +am+s++++++ara+dPv G++++il+l++qle+ +aela XP_010924994.1 35 ACAACKYQRRRCNPDCTLAPYFPADQQRQFLNAHRLFGVSNILKIIRDLDPVQRAEAMRSIIFQSNARAHDPVGGCYRIILELERQLEHDSAELA 129 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_010924994.1 130 LVLRQ 134 98655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.982	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-38	35	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MTTATSSNTS TTTTTTSHPH RHRPSSATSQ PATQACAACK YQRRRCNPDC TLAPYFPADQ 60 QRQFLNAHRL FGVSNILKII RDLDPVQRAE AMRSIIFQSN ARAHDPVGGC YRIILELERQ 120 LEHDSAELAL VLRQLAFCRS QAQAALSPTM TAVTSDLGSV HPNLILNADD TGGDAIYGGH 180 QNNLVALPMH QQQQQCNDYF YYDGGGGGDH HSDHHNNNNN GTSNSNSVDD KHHHNYDNRG 240 VEVEVPTMSM LSLHPQQCGV DEEDVKPLVD MFEIRQAFTI GDDEEEPAKN CAAAVAEPFQ 300 CSGKIEFKEE LNPIEDVPEH DLKGAASLFT LTNCTNSSIG FELRDAN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MTTATSSNTS TTTTTTSHPH RHRPSSATSQ PATQACAACK YQRRRCNPDC TLAPYFPADQ  60
QRQFLNAHRL FGVSNILKII RDLDPVQRAE AMRSIIFQSN ARAHDPVGGC YRIILELERQ  120
LEHDSAELAL VLRQLAFCRS QAQAALSPTM TAVTSDLGSV HPNLILNADD TGGDAIYGGH  180
QNNLVALPMH QQQQQCNDYF YYDGGGGGDH HSDHHNNNNN GTSNSNSVDD KHHHNYDNRG  240
VEVEVPTMSM LSLHPQQCGV DEEDVKPLVD MFEIRQAFTI GDDEEEPAKN CAAAVAEPFQ  300
CSGKIEFKEE LNPIEDVPEH DLKGAASLFT LTNCTNSSIG FELRDAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-25	25	128	1	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-25	25	128	1	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924994.1	0.0	LOB domain-containing protein 6 isoform X1
TrEMBL	A0A2H3X816	1e-159	A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRING	XP_008779803.1	1e-156	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	9e-45	LOB domain-containing protein 22