PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 866aa MW: 95342.8 Da PI: 5.8326 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1e-06 | 595 | 615 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f++ G C+ Gd+CkF+H+ XP_010924987.1 595 YCNFYLM-GRCQQGDSCKFSHD 615 6999999.*************7 PP | |||||||
2 | zf-CCCH | 20.2 | 1.1e-06 | 649 | 669 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f+ G C++Gd+CkF+H XP_010924987.1 649 PCHNFSSKGMCSRGDKCKFSH 669 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.197 | 590 | 617 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 590 | 615 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 591 | 616 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 594 | 615 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 595 | 615 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 619 | 645 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.131 | 619 | 643 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-5 | 621 | 644 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 644 | 672 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 647 | 671 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 648 | 676 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 649 | 670 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MEDLVRSPAP ELQTLNPRME GFSRSPSPAP RRSHLDSASY RTLVRIFSLC LDKSLARPQE 60 SCKDPNSRSD EVPESSCTGK DSIFGRNGDG HVAEEIGPGR KEEEHSGFEG SERGGFEGSE 120 RGGFGGSERS QGSACGNPRF DDSSLNGNIA LREELGHEND TSAELSESLV FEKLQSGGTK 180 DEALHRMEEL GHGNGHDECD RSANDGTREG LFFRDLEHLL HENINSVEQP ANGELLNDMI 240 SDFSGSIDDP NDLVCAEGSQ DGQRRLGHGE LANNELQKDV PLRKSKLADS KNQISCSEQG 300 KNHEPQDENG KIIFSGDELI YSSEELLHGK MRVEGHGERV DDVLAKDMFP DKHMMDDVRD 360 KEIKSVKELG EGLQQEARCC PDSLMECSGS IEMAGPVLAS EDGGDIEEGE IPGELNISDQ 420 DLDLAHEHVV LEHRNLEAGT TYCGSPNKGD TNMTCIDEGM HSRESNYKDD ESAVPIHIAE 480 GDIMHVSGDD RSSETQMKKS YSSGMRVDVK CPAVDPEALG LTGENLEKTT SQNKEKPSNS 540 VAVEARLKRK RGALTEERKA KRKKAKKRKR AQKEREQGVK RLKLQPISKP KTVKYCNFYL 600 MGRCQQGDSC KFSHDTTPLT KSQPCTYFAR DSCLKGDDCP FDHQLSKYPC HNFSSKGMCS 660 RGDKCKFSHK ITTNEASSSM PIISESKSPL TSEKLNLRKQ NTTNSTSIVA CGPPKTTASS 720 TPFPIHRNME GDTIKPPKIP MRIPNGIRFL SFGKGPSDSI SKHQDNLLKE CKILDQQNQE 780 KFLMDGHKND ANDRSSAQKS LLKAHSESKM MSGRAANSAI NPFDNKNLKN NSFSSVPSVA 840 PGSRSLHSEV SDASKILEEF LFSGIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 546 | 563 | LKRKRGALTEERKAKRKK |
2 | 547 | 566 | KRKRGALTEERKAKRKKAKK |
3 | 548 | 569 | RKRGALTEERKAKRKKAKKRKR |
4 | 561 | 582 | RKKAKKRKRAQKEREQGVKRLK |
5 | 564 | 570 | AKKRKRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924983.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_010924985.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_010924986.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_010924988.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_019707007.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_029121140.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_029121141.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A2H3Z2K6 | 0.0 | A0A2H3Z2K6_PHODC; zinc finger CCCH domain-containing protein 7 | ||||
STRING | XP_008807156.1 | 0.0 | (Phoenix dactylifera) |