PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 539aa MW: 56957.9 Da PI: 7.9404 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 8.5e-11 | 168 | 192 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ XP_010924871.1 168 GEKDCTHYMLTRTCKFGNSCKFDHP 192 7889********************8 PP | |||||||
2 | zf-CCCH | 37.4 | 4.3e-12 | 219 | 245 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++t Ck+G+rCkF+H++ XP_010924871.1 219 PGEPECPYYMKTQKCKFGSRCKFNHPK 245 5799*********************96 PP | |||||||
3 | zf-CCCH | 34.5 | 3.5e-11 | 274 | 295 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++tG Ck+G++CkF+H++ XP_010924871.1 274 CSFYMKTGKCKFGPNCKFHHPK 295 ********************96 PP | |||||||
4 | zf-CCCH | 36.8 | 6.8e-12 | 349 | 373 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_010924871.1 349 GETDCPFYLKTGSCKYGATCRYNHP 373 6789********************9 PP | |||||||
5 | zf-CCCH | 41.1 | 2.9e-13 | 425 | 448 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G+rCkF+H+ XP_010924871.1 425 EIECDFYMKTGQCKFGERCKFHHP 448 568********************8 PP | |||||||
6 | zf-CCCH | 42.4 | 1.1e-13 | 480 | 503 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtCk+G++CkF H+p XP_010924871.1 480 VICSFYMKTGTCKFGATCKFDHPP 503 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.281 | 166 | 194 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 166 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 167 | 193 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 168 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 220 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 223 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 224 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.098 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-6 | 274 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 274 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-7 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 349 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 350 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 353 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.347 | 422 | 450 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-7 | 422 | 449 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-6 | 425 | 450 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-11 | 425 | 448 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 428 | 448 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 476 | 504 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-8 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-11 | 480 | 503 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 480 | 503 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 481 | 501 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MSNQIYNYGS SFGGGGGASS LYSRRATNSY LSDGGSSRLS SVDPFAAADT VMYSDRMSSL 60 YSKAGDGSLR LHGSDIAGFG AAGSFSAAGK IGGGIGTASS AALYASSALD PSAIGGAKRS 120 VEALYNQSIL GSHNTIGQSD ALFSSNSLVK RSRLETASNL PIYPQRPGEK DCTHYMLTRT 180 CKFGNSCKFD HPIWVPEGGI PDWKEVPLVP TSESLPERPG EPECPYYMKT QKCKFGSRCK 240 FNHPKDILNA SAGEVGGEGP DNSVLPERPS EPFCSFYMKT GKCKFGPNCK FHHPKDLQIP 300 PNGEDTGNTG QVESEKDDGA AGDPKPANGH VPITPALLHN SKGLPIRPGE TDCPFYLKTG 360 SCKYGATCRY NHPDRSCQAV IPSPATNLPF GVLNPAASLL QNINLQSAQA SLGVVPTIYP 420 QRPGEIECDF YMKTGQCKFG ERCKFHHPID RSAPSSDVKQ SLQQNVKLTL AGLPRREGAV 480 ICSFYMKTGT CKFGATCKFD HPPPGEAIAM ATGSGTATGV SATDGGENKA AAALAEGLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924871.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2H3Y0M1 | 0.0 | A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like | ||||
STRING | XP_008791420.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |