PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 549aa MW: 57875.9 Da PI: 7.9647 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 8.7e-11 | 168 | 192 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ XP_010924870.1 168 GEKDCTHYMLTRTCKFGNSCKFDHP 192 7889********************8 PP | |||||||
2 | zf-CCCH | 37.4 | 4.4e-12 | 219 | 245 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++t Ck+G+rCkF+H++ XP_010924870.1 219 PGEPECPYYMKTQKCKFGSRCKFNHPK 245 5799*********************96 PP | |||||||
3 | zf-CCCH | 34.5 | 3.6e-11 | 274 | 295 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++tG Ck+G++CkF+H++ XP_010924870.1 274 CSFYMKTGKCKFGPNCKFHHPK 295 ********************96 PP | |||||||
4 | zf-CCCH | 36.7 | 6.9e-12 | 349 | 373 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_010924870.1 349 GETDCPFYLKTGSCKYGATCRYNHP 373 6789********************9 PP | |||||||
5 | zf-CCCH | 41.1 | 2.9e-13 | 435 | 458 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G+rCkF+H+ XP_010924870.1 435 EIECDFYMKTGQCKFGERCKFHHP 458 568********************8 PP | |||||||
6 | zf-CCCH | 42.4 | 1.2e-13 | 490 | 513 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtCk+G++CkF H+p XP_010924870.1 490 VICSFYMKTGTCKFGATCKFDHPP 513 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0034 | 166 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.281 | 166 | 194 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 167 | 193 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-8 | 168 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 220 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 223 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 224 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.098 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-6 | 274 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 274 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-7 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 349 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 350 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 353 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-7 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.347 | 432 | 460 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-11 | 435 | 458 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 435 | 460 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 438 | 458 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-8 | 486 | 513 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 486 | 514 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-11 | 490 | 513 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 490 | 513 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 491 | 511 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MSNQIYNYGS SFGGGGGASS LYSRRATNSY LSDGGSSRLS SVDPFAAADT VMYSDRMSSL 60 YSKAGDGSLR LHGSDIAGFG AAGSFSAAGK IGGGIGTASS AALYASSALD PSAIGGAKRS 120 VEALYNQSIL GSHNTIGQSD ALFSSNSLVK RSRLETASNL PIYPQRPGEK DCTHYMLTRT 180 CKFGNSCKFD HPIWVPEGGI PDWKEVPLVP TSESLPERPG EPECPYYMKT QKCKFGSRCK 240 FNHPKDILNA SAGEVGGEGP DNSVLPERPS EPFCSFYMKT GKCKFGPNCK FHHPKDLQIP 300 PNGEDTGNTG QVESEKDDGA AGDPKPANGH VPITPALLHN SKGLPIRPGE TDCPFYLKTG 360 SCKYGATCRY NHPDRSSINP PLASALGQAV IPSPATNLPF GVLNPAASLL QNINLQSAQA 420 SLGVVPTIYP QRPGEIECDF YMKTGQCKFG ERCKFHHPID RSAPSSDVKQ SLQQNVKLTL 480 AGLPRREGAV ICSFYMKTGT CKFGATCKFD HPPPGEAIAM ATGSGTATGV SATDGGENKA 540 AAALAEGLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924870.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2H3Y0M1 | 0.0 | A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like | ||||
STRING | XP_008791420.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |