PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 11410.9 Da PI: 7.5447 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 40 | 78 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++E++l ++ ++ G + W++Ia +++ gR ++++ +w XP_010924845.1 40 SEQEEDLVYRMYRLVGDR-WTLIADRIP-GRKPEEIERFWM 78 89**************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.5E-5 | 35 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-7 | 40 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.78E-6 | 40 | 79 | No hit | No description |
PROSITE profile | PS50090 | 6.063 | 40 | 77 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.0E-7 | 40 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-9 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MPFSIRSEAM DDRRRPKQPR TSNRDTPEVS STEWELINLS EQEEDLVYRM YRLVGDRWTL 60 IADRIPGRKP EEIERFWMMK HEEGFAEKRL RRAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924845.1 | 7e-63 | transcription factor TRY | ||||
Swissprot | Q8GV05 | 4e-34 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A2H3Y0D7 | 2e-44 | A0A2H3Y0D7_PHODC; transcription factor CPC-like | ||||
STRING | XP_008791434.1 | 3e-45 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 2e-36 | MYB_related family protein |