PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HB-other | ||||||||
Protein Properties | Length: 254aa MW: 29338.7 Da PI: 5.8173 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.1 | 1.9e-05 | 11 | 73 | 1 | 52 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 r++Rt+ft++++ ++e+l ++ + +++ + +k+l ++ +qV+ WFq + XP_010924663.1 11 RSQRTRFTRSEISQMENLLAEkKDELDQIFFQNVTKELnaasgragsrAIQMEQVQKWFQSEK 73 689*****************8899************************************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.054 | 8 | 79 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 3.4E-44 | 123 | 249 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006306 | Biological Process | DNA methylation | ||||
GO:0006346 | Biological Process | methylation-dependent chromatin silencing | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGKPIRSRPR RSQRTRFTRS EISQMENLLA EKKDELDQIF FQNVTKELNA ASGRAGSRAI 60 QMEQVQKWFQ SEKRNQATEV TSSPNPSEEF INISDTSLSN SAPESSSDLP KDTGEKVPDE 120 MNWEFEARSS RDGAWYDVAT FLTHRVLSSG ELEVRVRYQG FGAEEDEWVN VKRAVRERSI 180 PLESSECRKV AVGDLVLCFQ ESAEQATYYD AHVIEIQRKL HDIRGCRCLF LIQYDHDQTE 240 EKVNLRRLCR RPAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 4e-55 | 125 | 252 | 6 | 133 | SHH1 SAWADEE |
4iur_B | 4e-55 | 125 | 252 | 6 | 133 | SHH1 SAWADEE |
4iut_A | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 4e-55 | 125 | 252 | 6 | 133 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924663.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X2 | ||||
TrEMBL | A0A2H3Z9Y4 | 1e-177 | A0A2H3Z9Y4_PHODC; protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 | ||||
STRING | XP_008810647.1 | 1e-178 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 4e-64 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |