PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924662.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HB-other
Protein Properties Length: 256aa    MW: 29630 Da    PI: 5.8173
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924662.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-051175152
                    TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC............TS-HHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl............gLterqVkvWFqNrR 52
                    r++Rt+ft++++ ++e+l ++ +  +++   +  +k+l            ++++ qV+ WFq  +
  XP_010924662.1 11 RSQRTRFTRSEISQMENLLAEkKDELDQIFFQNVTKELnaasgragsraiQMEQYQVQKWFQSEK 75
                    689***************99879999999999999999999999999999************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.021881IPR001356Homeobox domain
PfamPF167193.5E-44125251IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGKPIRSRPR RSQRTRFTRS EISQMENLLA EKKDELDQIF FQNVTKELNA ASGRAGSRAI  60
QMEQYQVQKW FQSEKRNQAT EVTSSPNPSE EFINISDTSL SNSAPESSSD LPKDTGEKVP  120
DEMNWEFEAR SSRDGAWYDV ATFLTHRVLS SGELEVRVRY QGFGAEEDEW VNVKRAVRER  180
SIPLESSECR KVAVGDLVLC FQESAEQATY YDAHVIEIQR KLHDIRGCRC LFLIQYDHDQ  240
TEEKVNLRRL CRRPAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A5e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B5e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-551272546133SHH1 SAWADEE
4iur_B4e-551272546133SHH1 SAWADEE
4iut_A4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-551272546133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121081.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
TrEMBLA0A2H3Z9Y41e-175A0A2H3Z9Y4_PHODC; protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
STRINGXP_008810647.11e-176(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-62sequence-specific DNA binding transcription factors;sequence-specific DNA binding