PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010924639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 366aa MW: 40767.8 Da PI: 7.6886 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.4 | 2.7e-14 | 292 | 317 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + ++G+C+yG++C+FaHg XP_010924639.1 292 FKTELCNKWEESGECPYGENCQFAHG 317 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-18 | 286 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-10 | 288 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-11 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-11 | 325 | 355 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 326 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-4 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MSPLGSETVA NRMQQKLLTP TNSDRLRSAI GTAPFLSPDR RFSCPPYFAN DGDSFWPYAS 60 VISTTEETTT RVTQPTGSGS VSLNPSTVSF DEEDPTGTEN RLYLARLTLQ YREIAEHYDL 120 CLSHLQEAAQ EAEALRLENA KLRIANSELA KRLNLLSGKQ NWQIASPAAG GHPILSIVDE 180 FGRLSVGEPP AETSPTSVLA FRENQFARRA TEKRGLPLKS ISVRSNGYLK LNQGVSAANR 240 NDRLRVSSPV MVDSQKVCVG GASKKKGERR GREEDEERGE ALDLEVYNQG MFKTELCNKW 300 EESGECPYGE NCQFAHGITE LRPVIRHPRY KTQICRMILA GDTCPYGHRC HFRHTSPSDC 360 FLLRPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-21 | 292 | 356 | 4 | 68 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924639.1 | 0.0 | zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A199VM36 | 1e-128 | A0A199VM36_ANACO; Zinc finger CCCH domain-containing protein 39 | ||||
STRING | XP_008800937.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-59 | C3H family protein |