PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924611.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 276aa    MW: 30610.3 Da    PI: 10.0025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924611.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33e-1622115187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W++ e+ aL+ea  +   +l+rg+l++++W+ev++++       ++r   r+ +qCk++++ l+k+yk +k++ ++   +++s++ ++++l+a
  XP_010924611.1  22 CWSEGETSALVEAWGDHYLELNRGNLRQKHWQEVADAVnsrrgasASRRPPRTDVQCKNRIDTLKKKYKIEKARISSSDGGATSQWTFYERLDA 115
                     7***************************************999998888899*************************999***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00911988IPR001005SANT/Myb domain
PfamPF138376.6E-2720116No hitNo description
Gene3DG3DSA:1.10.10.601.3E-42288IPR009057Homeodomain-like
PROSITE profilePS500906.0052386IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDGRETAPSR PPNPALPYRE DCWSEGETSA LVEAWGDHYL ELNRGNLRQK HWQEVADAVN  60
SRRGASASRR PPRTDVQCKN RIDTLKKKYK IEKARISSSD GGATSQWTFY ERLDALIGSA  120
APAKKPSPPL ALPLPYHRKG SPLPAAAAAF RPADKRPVAA LAVDDPSFFR RAAAAAAAES  180
AEDEEEEDSG SSSTSGRGGR GAREGNGDGI RQLARAITRF AEIYERVERA KQRQMMELEK  240
QRMEFAKGLE FQRMQIFVDS QVQLEKIKRA KRADSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924610.10.0trihelix transcription factor ASIL1 isoform X3
RefseqXP_010924611.10.0trihelix transcription factor ASIL1 isoform X2
TrEMBLA0A2H3XVI31e-144A0A2H3XVI3_PHODC; trihelix transcription factor ASIL2-like
STRINGXP_008789387.11e-145(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-36sequence-specific DNA binding transcription factors