PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 577aa MW: 64436.4 Da PI: 6.3454 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.3e-09 | 514 | 552 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + XP_010924486.1 514 MFQNflHPYPKDDEKHSLALKSGLTRSQVSNWFINARVR 552 6887779******************************88 PP | |||||||
2 | BELL | 69.3 | 6.8e-23 | 386 | 456 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e +k k++Ll +l+++d rY+q+ +q+q v+s+F+ +++ + ++++++Al++iS +++L+++i+++i XP_010924486.1 386 RLETEKEKSQLLVMLQMIDCRYNQCLDQIQNVMSAFNKATESVTPQLHARFALHTISVIYKNLRERITSRI 456 678999*************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.7E-22 | 307 | 454 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-28 | 313 | 453 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.92 | 493 | 556 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-15 | 496 | 564 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.52E-11 | 496 | 557 | No hit | No description |
SMART | SM00389 | 3.0E-6 | 496 | 560 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 499 | 562 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.7E-15 | 513 | 552 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MENDVFNASQ QTTDHNQMDI DAVTSDIFSG PFIQSGMKDY DSHEQMICGN IVHPTLPEEV 60 TNDPYITNHG DISDHALRGN ASFEDSIGKT GWWTGASVSA TSLAYLLSGS HSLQEDLTCS 120 GVSSALPLDE IRSLSSSDCC DTFGPQDVAS FSRSKIDDSM NGKLGYGWNC DETQDHRVPS 180 SRTSIVPPSY HVQGCSEPGW DSNLYIITSD HLPSSCVPNN ELSLTLGSYQ TSMMNMLNVP 240 DQCSKLSCSK LTQVISKDGE NPVASELRDS FRVFSSSQNV RVRMALGVAQ TFTAGEELSL 300 YHNSSPFYFP CALLGSRYLR VGQQILTEIA SYAKLDDLLS GIKGEARMSF SSSCSNERGI 360 ISVGCDKFPL SSGGTKSRGH MDRQQRLETE KEKSQLLVML QMIDCRYNQC LDQIQNVMSA 420 FNKATESVTP QLHARFALHT ISVIYKNLRE RITSRILLTG QRLSSKCTKE LEKTLESSLI 480 QKQWTLQKMK KDQQSWRPQR GLPEQSVSVL RAWMFQNFLH PYPKDDEKHS LALKSGLTRS 540 QVSNWFINAR VRLWKPMIEE MYVEFSKQNW NGVTGGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 502 | 559 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 502 | 559 | 1 | 58 | Homeobox protein Meis1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019706694.1 | 0.0 | homeobox protein ATH1 | ||||
TrEMBL | A0A2H3ZS82 | 0.0 | A0A2H3ZS82_PHODC; homeobox protein ATH1-like isoform X1 | ||||
STRING | XP_008795472.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3143 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 6e-79 | homeobox gene 1 |