PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924486.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 577aa    MW: 64436.4 Da    PI: 6.3454
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924486.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-095145521854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_010924486.1 514 MFQNflHPYPKDDEKHSLALKSGLTRSQVSNWFINARVR 552
                     6887779******************************88 PP

2BELL69.36.8e-23386456272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     r e +k k++Ll +l+++d rY+q+ +q+q v+s+F+ +++  + ++++++Al++iS  +++L+++i+++i
  XP_010924486.1 386 RLETEKEKSQLLVMLQMIDCRYNQCLDQIQNVMSAFNKATESVTPQLHARFALHTISVIYKNLRERITSRI 456
                     678999*************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-22307454IPR006563POX domain
PfamPF075261.6E-28313453IPR006563POX domain
PROSITE profilePS5007111.92493556IPR001356Homeobox domain
SuperFamilySSF466891.41E-15496564IPR009057Homeodomain-like
CDDcd000861.52E-11496557No hitNo description
SMARTSM003893.0E-6496560IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-26499562IPR009057Homeodomain-like
PfamPF059204.7E-15513552IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MENDVFNASQ QTTDHNQMDI DAVTSDIFSG PFIQSGMKDY DSHEQMICGN IVHPTLPEEV  60
TNDPYITNHG DISDHALRGN ASFEDSIGKT GWWTGASVSA TSLAYLLSGS HSLQEDLTCS  120
GVSSALPLDE IRSLSSSDCC DTFGPQDVAS FSRSKIDDSM NGKLGYGWNC DETQDHRVPS  180
SRTSIVPPSY HVQGCSEPGW DSNLYIITSD HLPSSCVPNN ELSLTLGSYQ TSMMNMLNVP  240
DQCSKLSCSK LTQVISKDGE NPVASELRDS FRVFSSSQNV RVRMALGVAQ TFTAGEELSL  300
YHNSSPFYFP CALLGSRYLR VGQQILTEIA SYAKLDDLLS GIKGEARMSF SSSCSNERGI  360
ISVGCDKFPL SSGGTKSRGH MDRQQRLETE KEKSQLLVML QMIDCRYNQC LDQIQNVMSA  420
FNKATESVTP QLHARFALHT ISVIYKNLRE RITSRILLTG QRLSSKCTKE LEKTLESSLI  480
QKQWTLQKMK KDQQSWRPQR GLPEQSVSVL RAWMFQNFLH PYPKDDEKHS LALKSGLTRS  540
QVSNWFINAR VRLWKPMIEE MYVEFSKQNW NGVTGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15502559158Homeobox protein Meis1
4xrs_B1e-15502559158Homeobox protein Meis1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706694.10.0homeobox protein ATH1
TrEMBLA0A2H3ZS820.0A0A2H3ZS82_PHODC; homeobox protein ATH1-like isoform X1
STRINGXP_008795472.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-79homeobox gene 1