PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28104.5 Da PI: 6.2627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l ++ +++G+g +W + +++ g++R++k+c++rw++yl XP_010924471.1 14 RGPWSPDEDAVLRNYLQKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.7e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_010924471.1 69 GGFTEEEDNIICTLYNKIGSR-WSVIASQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.284 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.67E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.353 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.70E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPD EDAVLRNYLQ KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC TLYNKIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKMMAS 120 NVTSTSTPPS QPSVLPAIKT EDHGSGADSS KSLGTDYGFT YDSQKLYTEI TQFSMMGLME 180 QPDFSGSAII SPPPEDISIA SSSITVDSNS GNGYINWSTD GVVGDDALLF GDFFGGYGFQ 240 EGMGVVSPCY YSNLNSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924471.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A2H3YA68 | 1e-129 | A0A2H3YA68_PHODC; transcription factor RAX1-like | ||||
STRING | XP_008795486.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 3e-74 | myb domain protein 84 |