PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | B3 | ||||||||
Protein Properties | Length: 462aa MW: 51646.6 Da PI: 10.3865 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 8 | 97 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv l+s+ l +p f ++ + +e + t++l+ +sg +W+v++ k+s++ ++++GWk+Fv ++ ++ gDf+vF++dg f v v XP_010924443.1 8 FFKVY--FPELSSDHLKIPPAFR-KYiE--HELPGTVSLKGPSGGTWNVEF--VKSSKGLLFANGWKKFVADHSIELGDFLVFRYDGGLHF--SVLV 95 55666..34567778******97.5525..458889***************..*******************************9985555..6666 PP E- CS B3 97 fr 98 ++ XP_010924443.1 96 LD 97 55 PP | |||||||
2 | B3 | 55.8 | 8.3e-18 | 358 | 446 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v+ s+v s + +p +f++eh ++ sk++tl d++g+ W v++ +s+r +++GW +F an+L+ D++vF+l++r+ +v++fr XP_010924443.1 358 VMRDSYVYVSFFMNIPYPFVREHL--PKISKKMTLWDPNGKPWAVNY--VSYSSRGGFSAGWGGFSYANNLEKYDVCVFELIKRDHM--KVHIFR 446 567789999999***********5..347899***************..6666666699**********************986555..999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-25 | 2 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-23 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.69E-20 | 6 | 97 | No hit | No description |
PROSITE profile | PS50863 | 14.311 | 6 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-16 | 8 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-15 | 8 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-25 | 346 | 446 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-26 | 348 | 446 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.56E-24 | 353 | 446 | No hit | No description |
SMART | SM01019 | 3.7E-15 | 354 | 448 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.197 | 355 | 448 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 358 | 446 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0034613 | Biological Process | cellular protein localization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MERSSPHFFK VYFPELSSDH LKIPPAFRKY IEHELPGTVS LKGPSGGTWN VEFVKSSKGL 60 LFANGWKKFV ADHSIELGDF LVFRYDGGLH FSVLVLDATA CEKEAAFLAR PYGGGHIAIV 120 DGIEGGEEGE TMGEHDSKAL VLSPNESFGV GHMRNICSVD CLAMQGPPSK TEKRKKGSPS 180 DEVAAISQDD LDSWKLRKSK SKTPDWSNSM VVARISPPSG ALAVPHKKVH ENTMREKDLH 240 KRKIVSSEHT MAVNKAKTKL QRGRPKTSAL SVTSTAKSLS KKVGRPSKMS ALKQSSQMSE 300 RLKLLPCNDV ARRGEVVAKV QRMPSLISQR RPVTKEEINK ALEQAKSFKS KSPFVRVVMR 360 DSYVYVSFFM NIPYPFVREH LPKISKKMTL WDPNGKPWAV NYVSYSSRGG FSAGWGGFSY 420 ANNLEKYDVC VFELIKRDHM KVHIFRVVKE IAPLIRNTKC KS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-19 | 325 | 447 | 19 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-19 | 325 | 447 | 19 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00192 | DAP | Transfer from AT1G49480 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924443.1 | 0.0 | B3 domain-containing protein Os11g0197600 isoform X2 | ||||
Swissprot | Q2R9D2 | 8e-57 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A2H3XRE3 | 0.0 | A0A2H3XRE3_PHODC; B3 domain-containing protein Os11g0197600-like isoform X2 | ||||
STRING | XP_008787667.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-19 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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