PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924437.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 377aa    MW: 39681.5 Da    PI: 8.1051
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924437.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-1857117257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  XP_010924437.1  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                     89*****************99*************************************995 PP
2Wus_type_Homeobox112.52.2e-3656119265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
     XP_010924437.1  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 119
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1252122IPR009057Homeodomain-like
PROSITE profilePS5007110.51153118IPR001356Homeobox domain
SMARTSM003891.4E-955122IPR001356Homeobox domain
CDDcd000863.46E-956119No hitNo description
Gene3DG3DSA:1.10.10.602.1E-756124IPR009057Homeodomain-like
PfamPF000462.0E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPSSNKHWPS LFKSKPCNAH HQWQHEINPS SLLSGGCQKT PYASAMPGCE ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKQR  120
HLQSSRSHPR SATTASAAPS PPTTAAPTTV ATSSSFDRSS GSDKIVPSVA SIGGFSGVTH  180
MPVTTPVVVS QPCFHVPMEL GGDPFIVQGP QTYCFSPQEL MTGILGVPEQ GTGVGSALWS  240
ELMGQVGCKG DEDGAKTKTQ LHHSFSVGAA TGATVACVGA AVGVSGGSTT VGAANSASFA  300
SPFSEIQGVG GAGGGGATRS TVFINEVAFE VVAGPFNVRE AFGEAAILFH SSGHPVLTNE  360
QGVTLQPLQH GASYYVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121206.10.0WUSCHEL-related homeobox 9 isoform X1
RefseqXP_029121207.10.0WUSCHEL-related homeobox 9 isoform X2
TrEMBLA0A3Q0I7P90.0A0A3Q0I7P9_PHODC; WUSCHEL-related homeobox 9-like
STRINGXP_008811551.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-59homeobox-3