PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924411.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1815aa MW: 203453 Da PI: 5.2849

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924411.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	8e-17	32	86	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ + yps+ r+eL++k+gL++rq ++WF+ rR k++k XP_010924411.1 32 KRKMKSPYQLEVLEKTYAVETYPSEVLRAELSAKTGLSDRQLQMWFCHRRLKDRK 86 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-15	10	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-15	25	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.03	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.4E-14	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-14	32	86	IPR001356	Homeobox domain
CDD	cd00086	9.15E-13	32	86	No hit	No description
SMART	SM00571	1.3E-21	570	629	IPR018501	DDT domain
PROSITE profile	PS50827	17.329	570	629	IPR018501	DDT domain
Pfam	PF02791	3.3E-18	571	626	IPR018501	DDT domain
Pfam	PF05066	2.3E-15	752	819	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-9	976	1019	IPR028942	WHIM1 domain
Pfam	PF15613	5.9E-13	1158	1230	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1815 aa Download sequence Send to blast
MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL 120 SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE 180 LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD 240 AKASTFLPSV EHCLMPSSSN GKRKPAVGGS SVVHPQMGPR ALHEYQFLPE QPSVRSEAYD 300 RLAPNYTFQG QMSGANLLSH QGRQQIYSAV ATEYETAPHS SSFASASSDT QFGVHQVMGL 360 ENPYLSSDRR IFRDEDSSRM ERKRKSEEAR IAKEVEAHER RIRKELEKQD ILRRKREEQM 420 RREMERHDRE RRKEEERMMR EKQREEVRFQ REQRRALERK EKFLQKETRR AEKMRQKEEL 480 RREKEAARLK AAHERATARR LAREYMELIE DERLELMELA ASSKGLSSIF SLDCDTLQQL 540 DSFRDMLSLF PPKSVQLKRP FAIQPWMDSE ENIGNLLMVW KFLITFADVL GLWPFTLDEF 600 VQSLHDYDSR LLGEIHVALL KSIIKDIEDV ARTPAIAMGA NQNSAASTGG GHPQIVEGAY 660 AWGFNIRSWQ RHLNYLTWPE ILRQFALSAG FGPQLKKRNV EHVYFRDDNE GNDGEDVIST 720 LRDGSAAENA VAWMQEKGYT HRRRSRHRLT PGTVKFAAFH VLSLEGSKGL TILEVADKIQ 780 KSGLRDLTTS KTPEASIAAA LSRDTKLFER TAPSTYCVRP PFRKDPADAE AVLSAAREKI 840 RVFQNGLSDS EAEKDAEDAD DAERDEDSEC DVADDPEVDD ASIEAKLNKN VPFATELKDT 900 RASTSLGTNK EAVCDEVELT PRNVSRNVEK GHSVPPPENS KVISASGASQ SLDVDSNCHG 960 VVSADMEDIE VDESNFGEPW VQGLTEGDYS DLSVEERVKA LVALIGVAVE GNSIRVILEE 1020 RLEAANALKK QMWAEAQLDK RRFKEEYASK LQYTSFTGSK AEATQTNAAT EGDQTPLHTV 1080 ENQSCDGNPN TITNDQYLEQ NSQITISNVS AEKNSLGQDF STNADTLPPQ QYGYAAEKSR 1140 SQLKSYIGHK AEQLYVYRSL PLGQDRRRNR YWQFSTSASP NDPGSGRIFF ESKDGFWRLL 1200 DSEEAFDALL AALDTRGIRE SHLHSMLQRI ETTFKEAIRR KKCTTSLNSA GGPAKGGASE 1260 MTSSPDCSTE FDSPSSTLCG HTSDALEFSK SFKIELGRNG IEKNAALQRY QGYLKWMWKE 1320 CYNPHMLCAM KYGKKRCSEV LQTCHFCYQS YLAEERHCPT CHKTFKPFHN ADSNFSEHVT 1380 QCEEKRKMDS ELKMQVSDSS PPIGIRLLKA KLAVIEVSIP AEALQPFWTE GYRKSWGVKL 1440 HSSSSAEELF QILTLLEGAI KRDCLSSHFE TTTELLSSTT PGFFVDSTVG LYGSVPVLPW 1500 VPDTAAAVTL RLLDFDSSIS YMLHQKLESH KEKEVGEFIK LPSRYAVVKN FQELDPADTA 1560 DQVDYQREAK WLDPGSRRRG RGRGSRGRGG RGRGRGGRGS RGNGSSARVE FRDDNINSFE 1620 KTTKKYTRRG RTRGRGGRRR GRRTVRPRQR SESRVPTFRK ESLFGNFNSV SNSVKQDNVE 1680 ESPRSSGGEE WGLEDTRRAY IEDDDNSEGS QSDENGQASG EEYDDQAADY AIDYDESKPI 1740 GLMDDESQEE DDPEDDEEGD EEVEEDEVDR NGHEVLDADV DDEDDEEIGD EGEVRDEGNG 1800 DEDEGASSFS SEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1815 aa Download sequence Send to blast

MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL  120
SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE  180
LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD  240
AKASTFLPSV EHCLMPSSSN GKRKPAVGGS SVVHPQMGPR ALHEYQFLPE QPSVRSEAYD  300
RLAPNYTFQG QMSGANLLSH QGRQQIYSAV ATEYETAPHS SSFASASSDT QFGVHQVMGL  360
ENPYLSSDRR IFRDEDSSRM ERKRKSEEAR IAKEVEAHER RIRKELEKQD ILRRKREEQM  420
RREMERHDRE RRKEEERMMR EKQREEVRFQ REQRRALERK EKFLQKETRR AEKMRQKEEL  480
RREKEAARLK AAHERATARR LAREYMELIE DERLELMELA ASSKGLSSIF SLDCDTLQQL  540
DSFRDMLSLF PPKSVQLKRP FAIQPWMDSE ENIGNLLMVW KFLITFADVL GLWPFTLDEF  600
VQSLHDYDSR LLGEIHVALL KSIIKDIEDV ARTPAIAMGA NQNSAASTGG GHPQIVEGAY  660
AWGFNIRSWQ RHLNYLTWPE ILRQFALSAG FGPQLKKRNV EHVYFRDDNE GNDGEDVIST  720
LRDGSAAENA VAWMQEKGYT HRRRSRHRLT PGTVKFAAFH VLSLEGSKGL TILEVADKIQ  780
KSGLRDLTTS KTPEASIAAA LSRDTKLFER TAPSTYCVRP PFRKDPADAE AVLSAAREKI  840
RVFQNGLSDS EAEKDAEDAD DAERDEDSEC DVADDPEVDD ASIEAKLNKN VPFATELKDT  900
RASTSLGTNK EAVCDEVELT PRNVSRNVEK GHSVPPPENS KVISASGASQ SLDVDSNCHG  960
VVSADMEDIE VDESNFGEPW VQGLTEGDYS DLSVEERVKA LVALIGVAVE GNSIRVILEE  1020
RLEAANALKK QMWAEAQLDK RRFKEEYASK LQYTSFTGSK AEATQTNAAT EGDQTPLHTV  1080
ENQSCDGNPN TITNDQYLEQ NSQITISNVS AEKNSLGQDF STNADTLPPQ QYGYAAEKSR  1140
SQLKSYIGHK AEQLYVYRSL PLGQDRRRNR YWQFSTSASP NDPGSGRIFF ESKDGFWRLL  1200
DSEEAFDALL AALDTRGIRE SHLHSMLQRI ETTFKEAIRR KKCTTSLNSA GGPAKGGASE  1260
MTSSPDCSTE FDSPSSTLCG HTSDALEFSK SFKIELGRNG IEKNAALQRY QGYLKWMWKE  1320
CYNPHMLCAM KYGKKRCSEV LQTCHFCYQS YLAEERHCPT CHKTFKPFHN ADSNFSEHVT  1380
QCEEKRKMDS ELKMQVSDSS PPIGIRLLKA KLAVIEVSIP AEALQPFWTE GYRKSWGVKL  1440
HSSSSAEELF QILTLLEGAI KRDCLSSHFE TTTELLSSTT PGFFVDSTVG LYGSVPVLPW  1500
VPDTAAAVTL RLLDFDSSIS YMLHQKLESH KEKEVGEFIK LPSRYAVVKN FQELDPADTA  1560
DQVDYQREAK WLDPGSRRRG RGRGSRGRGG RGRGRGGRGS RGNGSSARVE FRDDNINSFE  1620
KTTKKYTRRG RTRGRGGRRR GRRTVRPRQR SESRVPTFRK ESLFGNFNSV SNSVKQDNVE  1680
ESPRSSGGEE WGLEDTRRAY IEDDDNSEGS QSDENGQASG EEYDDQAADY AIDYDESKPI  1740
GLMDDESQEE DDPEDDEEGD EEVEEDEVDR NGHEVLDADV DDEDDEEIGD EGEVRDEGNG  1800
DEDEGASSFS SEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	33	KKPASTPEGGDTKPPKRK
2	1587	1595	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924409.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3YG20	0.0	A0A2H3YG20_PHODC; homeobox-DDT domain protein RLT2-like isoform X2
STRING	XP_008798262.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator