PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924410.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1818aa MW: 203794 Da PI: 5.3104

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924410.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	8e-17	32	86	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ + yps+ r+eL++k+gL++rq ++WF+ rR k++k XP_010924410.1 32 KRKMKSPYQLEVLEKTYAVETYPSEVLRAELSAKTGLSDRQLQMWFCHRRLKDRK 86 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-15	10	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-15	25	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.03	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.4E-14	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-14	32	86	IPR001356	Homeobox domain
CDD	cd00086	9.17E-13	32	86	No hit	No description
PROSITE profile	PS50827	17.329	573	632	IPR018501	DDT domain
SMART	SM00571	1.3E-21	573	632	IPR018501	DDT domain
Pfam	PF02791	3.3E-18	574	629	IPR018501	DDT domain
Pfam	PF05066	2.3E-15	755	822	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-9	979	1022	IPR028942	WHIM1 domain
Pfam	PF15613	5.9E-13	1161	1233	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1818 aa Download sequence Send to blast
MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL 120 SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE 180 LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD 240 AKVIKASTFL PSVEHCLMPS SSNGKRKPAV GGSSVVHPQM GPRALHEYQF LPEQPSVRSE 300 AYDRLAPNYT FQGQMSGANL LSHQGRQQIY SAVATEYETA PHSSSFASAS SDTQFGVHQV 360 MGLENPYLSS DRRIFRDEDS SRMERKRKSE EARIAKEVEA HERRIRKELE KQDILRRKRE 420 EQMRREMERH DRERRKEEER MMREKQREEV RFQREQRRAL ERKEKFLQKE TRRAEKMRQK 480 EELRREKEAA RLKAAHERAT ARRLAREYME LIEDERLELM ELAASSKGLS SIFSLDCDTL 540 QQLDSFRDML SLFPPKSVQL KRPFAIQPWM DSEENIGNLL MVWKFLITFA DVLGLWPFTL 600 DEFVQSLHDY DSRLLGEIHV ALLKSIIKDI EDVARTPAIA MGANQNSAAS TGGGHPQIVE 660 GAYAWGFNIR SWQRHLNYLT WPEILRQFAL SAGFGPQLKK RNVEHVYFRD DNEGNDGEDV 720 ISTLRDGSAA ENAVAWMQEK GYTHRRRSRH RLTPGTVKFA AFHVLSLEGS KGLTILEVAD 780 KIQKSGLRDL TTSKTPEASI AAALSRDTKL FERTAPSTYC VRPPFRKDPA DAEAVLSAAR 840 EKIRVFQNGL SDSEAEKDAE DADDAERDED SECDVADDPE VDDASIEAKL NKNVPFATEL 900 KDTRASTSLG TNKEAVCDEV ELTPRNVSRN VEKGHSVPPP ENSKVISASG ASQSLDVDSN 960 CHGVVSADME DIEVDESNFG EPWVQGLTEG DYSDLSVEER VKALVALIGV AVEGNSIRVI 1020 LEERLEAANA LKKQMWAEAQ LDKRRFKEEY ASKLQYTSFT GSKAEATQTN AATEGDQTPL 1080 HTVENQSCDG NPNTITNDQY LEQNSQITIS NVSAEKNSLG QDFSTNADTL PPQQYGYAAE 1140 KSRSQLKSYI GHKAEQLYVY RSLPLGQDRR RNRYWQFSTS ASPNDPGSGR IFFESKDGFW 1200 RLLDSEEAFD ALLAALDTRG IRESHLHSML QRIETTFKEA IRRKKCTTSL NSAGGPAKGG 1260 ASEMTSSPDC STEFDSPSST LCGHTSDALE FSKSFKIELG RNGIEKNAAL QRYQGYLKWM 1320 WKECYNPHML CAMKYGKKRC SEVLQTCHFC YQSYLAEERH CPTCHKTFKP FHNADSNFSE 1380 HVTQCEEKRK MDSELKMQVS DSSPPIGIRL LKAKLAVIEV SIPAEALQPF WTEGYRKSWG 1440 VKLHSSSSAE ELFQILTLLE GAIKRDCLSS HFETTTELLS STTPGFFVDS TVGLYGSVPV 1500 LPWVPDTAAA VTLRLLDFDS SISYMLHQKL ESHKEKEVGE FIKLPSRYAV VKNFQELDPA 1560 DTADQVDYQR EAKWLDPGSR RRGRGRGSRG RGGRGRGRGG RGSRGNGSSA RVEFRDDNIN 1620 SFEKTTKKYT RRGRTRGRGG RRRGRRTVRP RQRSESRVPT FRKESLFGNF NSVSNSVKQD 1680 NVEESPRSSG GEEWGLEDTR RAYIEDDDNS EGSQSDENGQ ASGEEYDDQA ADYAIDYDES 1740 KPIGLMDDES QEEDDPEDDE EGDEEVEEDE VDRNGHEVLD ADVDDEDDEE IGDEGEVRDE 1800 GNGDEDEGAS SFSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1818 aa Download sequence Send to blast

MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL  120
SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE  180
LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD  240
AKVIKASTFL PSVEHCLMPS SSNGKRKPAV GGSSVVHPQM GPRALHEYQF LPEQPSVRSE  300
AYDRLAPNYT FQGQMSGANL LSHQGRQQIY SAVATEYETA PHSSSFASAS SDTQFGVHQV  360
MGLENPYLSS DRRIFRDEDS SRMERKRKSE EARIAKEVEA HERRIRKELE KQDILRRKRE  420
EQMRREMERH DRERRKEEER MMREKQREEV RFQREQRRAL ERKEKFLQKE TRRAEKMRQK  480
EELRREKEAA RLKAAHERAT ARRLAREYME LIEDERLELM ELAASSKGLS SIFSLDCDTL  540
QQLDSFRDML SLFPPKSVQL KRPFAIQPWM DSEENIGNLL MVWKFLITFA DVLGLWPFTL  600
DEFVQSLHDY DSRLLGEIHV ALLKSIIKDI EDVARTPAIA MGANQNSAAS TGGGHPQIVE  660
GAYAWGFNIR SWQRHLNYLT WPEILRQFAL SAGFGPQLKK RNVEHVYFRD DNEGNDGEDV  720
ISTLRDGSAA ENAVAWMQEK GYTHRRRSRH RLTPGTVKFA AFHVLSLEGS KGLTILEVAD  780
KIQKSGLRDL TTSKTPEASI AAALSRDTKL FERTAPSTYC VRPPFRKDPA DAEAVLSAAR  840
EKIRVFQNGL SDSEAEKDAE DADDAERDED SECDVADDPE VDDASIEAKL NKNVPFATEL  900
KDTRASTSLG TNKEAVCDEV ELTPRNVSRN VEKGHSVPPP ENSKVISASG ASQSLDVDSN  960
CHGVVSADME DIEVDESNFG EPWVQGLTEG DYSDLSVEER VKALVALIGV AVEGNSIRVI  1020
LEERLEAANA LKKQMWAEAQ LDKRRFKEEY ASKLQYTSFT GSKAEATQTN AATEGDQTPL  1080
HTVENQSCDG NPNTITNDQY LEQNSQITIS NVSAEKNSLG QDFSTNADTL PPQQYGYAAE  1140
KSRSQLKSYI GHKAEQLYVY RSLPLGQDRR RNRYWQFSTS ASPNDPGSGR IFFESKDGFW  1200
RLLDSEEAFD ALLAALDTRG IRESHLHSML QRIETTFKEA IRRKKCTTSL NSAGGPAKGG  1260
ASEMTSSPDC STEFDSPSST LCGHTSDALE FSKSFKIELG RNGIEKNAAL QRYQGYLKWM  1320
WKECYNPHML CAMKYGKKRC SEVLQTCHFC YQSYLAEERH CPTCHKTFKP FHNADSNFSE  1380
HVTQCEEKRK MDSELKMQVS DSSPPIGIRL LKAKLAVIEV SIPAEALQPF WTEGYRKSWG  1440
VKLHSSSSAE ELFQILTLLE GAIKRDCLSS HFETTTELLS STTPGFFVDS TVGLYGSVPV  1500
LPWVPDTAAA VTLRLLDFDS SISYMLHQKL ESHKEKEVGE FIKLPSRYAV VKNFQELDPA  1560
DTADQVDYQR EAKWLDPGSR RRGRGRGSRG RGGRGRGRGG RGSRGNGSSA RVEFRDDNIN  1620
SFEKTTKKYT RRGRTRGRGG RRRGRRTVRP RQRSESRVPT FRKESLFGNF NSVSNSVKQD  1680
NVEESPRSSG GEEWGLEDTR RAYIEDDDNS EGSQSDENGQ ASGEEYDDQA ADYAIDYDES  1740
KPIGLMDDES QEEDDPEDDE EGDEEVEEDE VDRNGHEVLD ADVDDEDDEE IGDEGEVRDE  1800
GNGDEDEGAS SFSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	33	KKPASTPEGGDTKPPKRK
2	1590	1598	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924408.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3YG59	0.0	A0A2H3YG59_PHODC; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_008798262.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator