PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924409.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1848aa MW: 206985 Da PI: 5.2856

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924409.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.5	8.1e-17	32	86	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ + yps+ r+eL++k+gL++rq ++WF+ rR k++k XP_010924409.1 32 KRKMKSPYQLEVLEKTYAVETYPSEVLRAELSAKTGLSDRQLQMWFCHRRLKDRK 86 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-15	10	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-15	25	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.03	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.4E-14	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-14	32	86	IPR001356	Homeobox domain
CDD	cd00086	8.50E-13	32	86	No hit	No description
PROSITE profile	PS50827	17.329	603	662	IPR018501	DDT domain
SMART	SM00571	1.3E-21	603	662	IPR018501	DDT domain
Pfam	PF02791	3.4E-18	604	659	IPR018501	DDT domain
Pfam	PF05066	2.3E-15	785	852	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-9	1009	1052	IPR028942	WHIM1 domain
Pfam	PF15613	6.0E-13	1191	1263	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1848 aa Download sequence Send to blast
MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL 120 SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE 180 LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD 240 AKASTFLPSV EHCLMPSSSN GKRKPAVGGS SVVHPQMGPR ALHEYQFLPE QPSVRSEAYD 300 RVSQSHFYDS SVDAPGTRIP SLTSGAQYLH GNEQLAPNYT FQGQMSGANL LSHQGRQQIY 360 SAVATEYETA PHSSSFASAS SDTQFGVHQV MGLENPYLSS DRRIFRDEDS SRMERKRKSE 420 EARIAKEVEA HERRIRKELE KQDILRRKRE EQMRREMERH DRERRKEEER MMREKQREEV 480 RFQREQRRAL ERKEKFLQKE TRRAEKMRQK EELRREKEAA RLKAAHERAT ARRLAREYME 540 LIEDERLELM ELAASSKGLS SIFSLDCDTL QQLDSFRDML SLFPPKSVQL KRPFAIQPWM 600 DSEENIGNLL MVWKFLITFA DVLGLWPFTL DEFVQSLHDY DSRLLGEIHV ALLKSIIKDI 660 EDVARTPAIA MGANQNSAAS TGGGHPQIVE GAYAWGFNIR SWQRHLNYLT WPEILRQFAL 720 SAGFGPQLKK RNVEHVYFRD DNEGNDGEDV ISTLRDGSAA ENAVAWMQEK GYTHRRRSRH 780 RLTPGTVKFA AFHVLSLEGS KGLTILEVAD KIQKSGLRDL TTSKTPEASI AAALSRDTKL 840 FERTAPSTYC VRPPFRKDPA DAEAVLSAAR EKIRVFQNGL SDSEAEKDAE DADDAERDED 900 SECDVADDPE VDDASIEAKL NKNVPFATEL KDTRASTSLG TNKEAVCDEV ELTPRNVSRN 960 VEKGHSVPPP ENSKVISASG ASQSLDVDSN CHGVVSADME DIEVDESNFG EPWVQGLTEG 1020 DYSDLSVEER VKALVALIGV AVEGNSIRVI LEERLEAANA LKKQMWAEAQ LDKRRFKEEY 1080 ASKLQYTSFT GSKAEATQTN AATEGDQTPL HTVENQSCDG NPNTITNDQY LEQNSQITIS 1140 NVSAEKNSLG QDFSTNADTL PPQQYGYAAE KSRSQLKSYI GHKAEQLYVY RSLPLGQDRR 1200 RNRYWQFSTS ASPNDPGSGR IFFESKDGFW RLLDSEEAFD ALLAALDTRG IRESHLHSML 1260 QRIETTFKEA IRRKKCTTSL NSAGGPAKGG ASEMTSSPDC STEFDSPSST LCGHTSDALE 1320 FSKSFKIELG RNGIEKNAAL QRYQGYLKWM WKECYNPHML CAMKYGKKRC SEVLQTCHFC 1380 YQSYLAEERH CPTCHKTFKP FHNADSNFSE HVTQCEEKRK MDSELKMQVS DSSPPIGIRL 1440 LKAKLAVIEV SIPAEALQPF WTEGYRKSWG VKLHSSSSAE ELFQILTLLE GAIKRDCLSS 1500 HFETTTELLS STTPGFFVDS TVGLYGSVPV LPWVPDTAAA VTLRLLDFDS SISYMLHQKL 1560 ESHKEKEVGE FIKLPSRYAV VKNFQELDPA DTADQVDYQR EAKWLDPGSR RRGRGRGSRG 1620 RGGRGRGRGG RGSRGNGSSA RVEFRDDNIN SFEKTTKKYT RRGRTRGRGG RRRGRRTVRP 1680 RQRSESRVPT FRKESLFGNF NSVSNSVKQD NVEESPRSSG GEEWGLEDTR RAYIEDDDNS 1740 EGSQSDENGQ ASGEEYDDQA ADYAIDYDES KPIGLMDDES QEEDDPEDDE EGDEEVEEDE 1800 VDRNGHEVLD ADVDDEDDEE IGDEGEVRDE GNGDEDEGAS SFSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1848 aa Download sequence Send to blast

MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL  120
SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE  180
LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD  240
AKASTFLPSV EHCLMPSSSN GKRKPAVGGS SVVHPQMGPR ALHEYQFLPE QPSVRSEAYD  300
RVSQSHFYDS SVDAPGTRIP SLTSGAQYLH GNEQLAPNYT FQGQMSGANL LSHQGRQQIY  360
SAVATEYETA PHSSSFASAS SDTQFGVHQV MGLENPYLSS DRRIFRDEDS SRMERKRKSE  420
EARIAKEVEA HERRIRKELE KQDILRRKRE EQMRREMERH DRERRKEEER MMREKQREEV  480
RFQREQRRAL ERKEKFLQKE TRRAEKMRQK EELRREKEAA RLKAAHERAT ARRLAREYME  540
LIEDERLELM ELAASSKGLS SIFSLDCDTL QQLDSFRDML SLFPPKSVQL KRPFAIQPWM  600
DSEENIGNLL MVWKFLITFA DVLGLWPFTL DEFVQSLHDY DSRLLGEIHV ALLKSIIKDI  660
EDVARTPAIA MGANQNSAAS TGGGHPQIVE GAYAWGFNIR SWQRHLNYLT WPEILRQFAL  720
SAGFGPQLKK RNVEHVYFRD DNEGNDGEDV ISTLRDGSAA ENAVAWMQEK GYTHRRRSRH  780
RLTPGTVKFA AFHVLSLEGS KGLTILEVAD KIQKSGLRDL TTSKTPEASI AAALSRDTKL  840
FERTAPSTYC VRPPFRKDPA DAEAVLSAAR EKIRVFQNGL SDSEAEKDAE DADDAERDED  900
SECDVADDPE VDDASIEAKL NKNVPFATEL KDTRASTSLG TNKEAVCDEV ELTPRNVSRN  960
VEKGHSVPPP ENSKVISASG ASQSLDVDSN CHGVVSADME DIEVDESNFG EPWVQGLTEG  1020
DYSDLSVEER VKALVALIGV AVEGNSIRVI LEERLEAANA LKKQMWAEAQ LDKRRFKEEY  1080
ASKLQYTSFT GSKAEATQTN AATEGDQTPL HTVENQSCDG NPNTITNDQY LEQNSQITIS  1140
NVSAEKNSLG QDFSTNADTL PPQQYGYAAE KSRSQLKSYI GHKAEQLYVY RSLPLGQDRR  1200
RNRYWQFSTS ASPNDPGSGR IFFESKDGFW RLLDSEEAFD ALLAALDTRG IRESHLHSML  1260
QRIETTFKEA IRRKKCTTSL NSAGGPAKGG ASEMTSSPDC STEFDSPSST LCGHTSDALE  1320
FSKSFKIELG RNGIEKNAAL QRYQGYLKWM WKECYNPHML CAMKYGKKRC SEVLQTCHFC  1380
YQSYLAEERH CPTCHKTFKP FHNADSNFSE HVTQCEEKRK MDSELKMQVS DSSPPIGIRL  1440
LKAKLAVIEV SIPAEALQPF WTEGYRKSWG VKLHSSSSAE ELFQILTLLE GAIKRDCLSS  1500
HFETTTELLS STTPGFFVDS TVGLYGSVPV LPWVPDTAAA VTLRLLDFDS SISYMLHQKL  1560
ESHKEKEVGE FIKLPSRYAV VKNFQELDPA DTADQVDYQR EAKWLDPGSR RRGRGRGSRG  1620
RGGRGRGRGG RGSRGNGSSA RVEFRDDNIN SFEKTTKKYT RRGRTRGRGG RRRGRRTVRP  1680
RQRSESRVPT FRKESLFGNF NSVSNSVKQD NVEESPRSSG GEEWGLEDTR RAYIEDDDNS  1740
EGSQSDENGQ ASGEEYDDQA ADYAIDYDES KPIGLMDDES QEEDDPEDDE EGDEEVEEDE  1800
VDRNGHEVLD ADVDDEDDEE IGDEGEVRDE GNGDEDEGAS SFSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	33	KKPASTPEGGDTKPPKRK
2	1620	1628	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924409.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3YG20	0.0	A0A2H3YG20_PHODC; homeobox-DDT domain protein RLT2-like isoform X2
STRING	XP_008798262.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator