PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924408.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1851aa MW: 207325 Da PI: 5.3107

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924408.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.5	8.2e-17	32	86	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ + yps+ r+eL++k+gL++rq ++WF+ rR k++k XP_010924408.1 32 KRKMKSPYQLEVLEKTYAVETYPSEVLRAELSAKTGLSDRQLQMWFCHRRLKDRK 86 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-15	10	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-15	25	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.03	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.4E-14	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-14	32	86	IPR001356	Homeobox domain
CDD	cd00086	8.52E-13	32	86	No hit	No description
SMART	SM00571	1.3E-21	606	665	IPR018501	DDT domain
PROSITE profile	PS50827	17.329	606	665	IPR018501	DDT domain
Pfam	PF02791	3.4E-18	607	662	IPR018501	DDT domain
Pfam	PF05066	2.3E-15	788	855	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-9	1012	1055	IPR028942	WHIM1 domain
Pfam	PF15613	6.0E-13	1194	1266	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1851 aa Download sequence Send to blast
MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL 120 SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE 180 LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD 240 AKVIKASTFL PSVEHCLMPS SSNGKRKPAV GGSSVVHPQM GPRALHEYQF LPEQPSVRSE 300 AYDRVSQSHF YDSSVDAPGT RIPSLTSGAQ YLHGNEQLAP NYTFQGQMSG ANLLSHQGRQ 360 QIYSAVATEY ETAPHSSSFA SASSDTQFGV HQVMGLENPY LSSDRRIFRD EDSSRMERKR 420 KSEEARIAKE VEAHERRIRK ELEKQDILRR KREEQMRREM ERHDRERRKE EERMMREKQR 480 EEVRFQREQR RALERKEKFL QKETRRAEKM RQKEELRREK EAARLKAAHE RATARRLARE 540 YMELIEDERL ELMELAASSK GLSSIFSLDC DTLQQLDSFR DMLSLFPPKS VQLKRPFAIQ 600 PWMDSEENIG NLLMVWKFLI TFADVLGLWP FTLDEFVQSL HDYDSRLLGE IHVALLKSII 660 KDIEDVARTP AIAMGANQNS AASTGGGHPQ IVEGAYAWGF NIRSWQRHLN YLTWPEILRQ 720 FALSAGFGPQ LKKRNVEHVY FRDDNEGNDG EDVISTLRDG SAAENAVAWM QEKGYTHRRR 780 SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE ASIAAALSRD 840 TKLFERTAPS TYCVRPPFRK DPADAEAVLS AAREKIRVFQ NGLSDSEAEK DAEDADDAER 900 DEDSECDVAD DPEVDDASIE AKLNKNVPFA TELKDTRAST SLGTNKEAVC DEVELTPRNV 960 SRNVEKGHSV PPPENSKVIS ASGASQSLDV DSNCHGVVSA DMEDIEVDES NFGEPWVQGL 1020 TEGDYSDLSV EERVKALVAL IGVAVEGNSI RVILEERLEA ANALKKQMWA EAQLDKRRFK 1080 EEYASKLQYT SFTGSKAEAT QTNAATEGDQ TPLHTVENQS CDGNPNTITN DQYLEQNSQI 1140 TISNVSAEKN SLGQDFSTNA DTLPPQQYGY AAEKSRSQLK SYIGHKAEQL YVYRSLPLGQ 1200 DRRRNRYWQF STSASPNDPG SGRIFFESKD GFWRLLDSEE AFDALLAALD TRGIRESHLH 1260 SMLQRIETTF KEAIRRKKCT TSLNSAGGPA KGGASEMTSS PDCSTEFDSP SSTLCGHTSD 1320 ALEFSKSFKI ELGRNGIEKN AALQRYQGYL KWMWKECYNP HMLCAMKYGK KRCSEVLQTC 1380 HFCYQSYLAE ERHCPTCHKT FKPFHNADSN FSEHVTQCEE KRKMDSELKM QVSDSSPPIG 1440 IRLLKAKLAV IEVSIPAEAL QPFWTEGYRK SWGVKLHSSS SAEELFQILT LLEGAIKRDC 1500 LSSHFETTTE LLSSTTPGFF VDSTVGLYGS VPVLPWVPDT AAAVTLRLLD FDSSISYMLH 1560 QKLESHKEKE VGEFIKLPSR YAVVKNFQEL DPADTADQVD YQREAKWLDP GSRRRGRGRG 1620 SRGRGGRGRG RGGRGSRGNG SSARVEFRDD NINSFEKTTK KYTRRGRTRG RGGRRRGRRT 1680 VRPRQRSESR VPTFRKESLF GNFNSVSNSV KQDNVEESPR SSGGEEWGLE DTRRAYIEDD 1740 DNSEGSQSDE NGQASGEEYD DQAADYAIDY DESKPIGLMD DESQEEDDPE DDEEGDEEVE 1800 EDEVDRNGHE VLDADVDDED DEEIGDEGEV RDEGNGDEDE GASSFSSEYS D

Sequence ? help Back to Top

Protein Sequence Length: 1851 aa Download sequence Send to blast

MEIGEGGEGK PPPEGCKKPA STPEGGDTKP PKRKMKSPYQ LEVLEKTYAV ETYPSEVLRA  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPQ PPAAAGGDVM MGSGSAGAGL  120
SSKPFAGGLG SGGETRKAVS RSAAAVSRIA LEMSSAGKRY HEPPPGLLPV VQPLPLSVAE  180
LRVIASVEAQ LGEPLREDGP ILGVEFDPLP PGAFGAPIAM PSQQKQPLRP YDGKMFERHD  240
AKVIKASTFL PSVEHCLMPS SSNGKRKPAV GGSSVVHPQM GPRALHEYQF LPEQPSVRSE  300
AYDRVSQSHF YDSSVDAPGT RIPSLTSGAQ YLHGNEQLAP NYTFQGQMSG ANLLSHQGRQ  360
QIYSAVATEY ETAPHSSSFA SASSDTQFGV HQVMGLENPY LSSDRRIFRD EDSSRMERKR  420
KSEEARIAKE VEAHERRIRK ELEKQDILRR KREEQMRREM ERHDRERRKE EERMMREKQR  480
EEVRFQREQR RALERKEKFL QKETRRAEKM RQKEELRREK EAARLKAAHE RATARRLARE  540
YMELIEDERL ELMELAASSK GLSSIFSLDC DTLQQLDSFR DMLSLFPPKS VQLKRPFAIQ  600
PWMDSEENIG NLLMVWKFLI TFADVLGLWP FTLDEFVQSL HDYDSRLLGE IHVALLKSII  660
KDIEDVARTP AIAMGANQNS AASTGGGHPQ IVEGAYAWGF NIRSWQRHLN YLTWPEILRQ  720
FALSAGFGPQ LKKRNVEHVY FRDDNEGNDG EDVISTLRDG SAAENAVAWM QEKGYTHRRR  780
SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE ASIAAALSRD  840
TKLFERTAPS TYCVRPPFRK DPADAEAVLS AAREKIRVFQ NGLSDSEAEK DAEDADDAER  900
DEDSECDVAD DPEVDDASIE AKLNKNVPFA TELKDTRAST SLGTNKEAVC DEVELTPRNV  960
SRNVEKGHSV PPPENSKVIS ASGASQSLDV DSNCHGVVSA DMEDIEVDES NFGEPWVQGL  1020
TEGDYSDLSV EERVKALVAL IGVAVEGNSI RVILEERLEA ANALKKQMWA EAQLDKRRFK  1080
EEYASKLQYT SFTGSKAEAT QTNAATEGDQ TPLHTVENQS CDGNPNTITN DQYLEQNSQI  1140
TISNVSAEKN SLGQDFSTNA DTLPPQQYGY AAEKSRSQLK SYIGHKAEQL YVYRSLPLGQ  1200
DRRRNRYWQF STSASPNDPG SGRIFFESKD GFWRLLDSEE AFDALLAALD TRGIRESHLH  1260
SMLQRIETTF KEAIRRKKCT TSLNSAGGPA KGGASEMTSS PDCSTEFDSP SSTLCGHTSD  1320
ALEFSKSFKI ELGRNGIEKN AALQRYQGYL KWMWKECYNP HMLCAMKYGK KRCSEVLQTC  1380
HFCYQSYLAE ERHCPTCHKT FKPFHNADSN FSEHVTQCEE KRKMDSELKM QVSDSSPPIG  1440
IRLLKAKLAV IEVSIPAEAL QPFWTEGYRK SWGVKLHSSS SAEELFQILT LLEGAIKRDC  1500
LSSHFETTTE LLSSTTPGFF VDSTVGLYGS VPVLPWVPDT AAAVTLRLLD FDSSISYMLH  1560
QKLESHKEKE VGEFIKLPSR YAVVKNFQEL DPADTADQVD YQREAKWLDP GSRRRGRGRG  1620
SRGRGGRGRG RGGRGSRGNG SSARVEFRDD NINSFEKTTK KYTRRGRTRG RGGRRRGRRT  1680
VRPRQRSESR VPTFRKESLF GNFNSVSNSV KQDNVEESPR SSGGEEWGLE DTRRAYIEDD  1740
DNSEGSQSDE NGQASGEEYD DQAADYAIDY DESKPIGLMD DESQEEDDPE DDEEGDEEVE  1800
EDEVDRNGHE VLDADVDDED DEEIGDEGEV RDEGNGDEDE GASSFSSEYS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	33	KKPASTPEGGDTKPPKRK
2	1623	1631	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924408.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3YG59	0.0	A0A2H3YG59_PHODC; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_008798262.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator