PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924405.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 826aa    MW: 91686.3 Da    PI: 6.4121
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924405.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.13.9e-24160261199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++  + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  XP_010924405.1 160 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyvQQ--RPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGN 250
                     99****************************97533..34569************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+++++r+
  XP_010924405.1 251 DGELRLGIRRA 261
                     9999****996 PP
2Auxin_resp123.91.2e-40286367182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stksvF+++YnPras+seF+v+++k+ k++++++s+GmRfkm++e+ed++err +G+++g+ dldpvrWp+SkWr+L
  XP_010924405.1 286 VANAVSTKSVFHIYYNPRASPSEFIVPYWKFAKSFSHSFSIGMRFKMRYESEDAAERRHTGLITGIGDLDPVRWPGSKWRCL 367
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-42156272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-39157269IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-23158260No hitNo description
PfamPF023624.6E-22160261IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267160262IPR003340B3 DNA binding domain
SMARTSM010193.4E-23160262IPR003340B3 DNA binding domain
PfamPF065077.8E-36286367IPR010525Auxin response factor
PROSITE profilePS5174520.835705787IPR000270PB1 domain
SuperFamilySSF542772.26E-9710781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MGIDLNTVEE EEEEEAELPL PAAAQVPRQE QHRASPPAAG AEALCLELWH ACAGPLISLP  60
RKGSVVVYLP QGHLEHLGDA AGGGGGCGGL FRYDLPPHVF CRVIDVKLHA DAATDEVYAQ  120
LSLVAESEVV ERQRREGEVE GDGEVEDVDG LHRSLMPHMF CKTLTASDTS THGGFSVPRR  180
AAEDCFPPLD YVQQRPSQEL IAKDLHGVEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS  240
GDAVLFLRGN DGELRLGIRR AAQLKNGTPF STPCSQSLDL GKLAAVANAV STKSVFHIYY  300
NPRASPSEFI VPYWKFAKSF SHSFSIGMRF KMRYESEDAA ERRHTGLITG IGDLDPVRWP  360
GSKWRCLLVR WDDDVDTGRQ NRVSPWEIEL TNSISGHNSL LAPGSKRTKL SLPMVDPDFP  420
VPNGNGCPDF GEFARFHKVL QGQEFIGFRT PYDGIDESIS QETEVRNHQY FDMRRSTTNA  480
NSCMSGGPSS GVRVPVGNSD LPYKCTGFSE SSGFQRVLQG QELVPENPPY QGAIVNIHSR  540
YGEFVSIDAL RTSGAGNRCP APSQGCTLLQ PLRLPVQALS PSSVLMFQQA SFKPPCSQSL  600
YDMNQRSKDD GALSRKDTTS LYYRPRYVEG EVINEHHKVG VHSSVHASKP ELRNDKKISS  660
SACKLFGFPL TQRIPLTNEV DRIERNFETN FPTSKSQIPA KPLGRSCTTV HKQGSVVVRV  720
VDLSKLDGYD ELICELEQLF DMKGLLNDPH RKWNVVYTDD EDDMMLVGDD PWQEFCKIAS  780
KILICTNYEE MLACGDEARG CSDQPSFPFN ITRFSLGSSK SSSLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1163639511359Auxin response factor 1
4ldw_A1e-1163639511359Auxin response factor 1
4ldw_B1e-1163639511359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924405.10.0auxin response factor 15 isoform X4
RefseqXP_029121019.10.0auxin response factor 15 isoform X3
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2H3YG640.0A0A2H3YG64_PHODC; Auxin response factor
STRINGXP_008798266.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-177ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]