PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010924399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 513aa MW: 57333.9 Da PI: 5.0992 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 440.7 | 1.9e-135 | 221 | 437 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqgsew+qdycssfhatlalneg+pg+tpvlrp+gidlkdg+lfaal ak+qgk+vgip+c+gaatakspwna+el XP_010924399.1 221 PPPSAFLGPKCALWDCPRPAQGSEWCQDYCSSFHATLALNEGPPGMTPVLRPGGIDLKDGPLFAALCAKTQGKNVGIPVCQGAATAKSPWNAPEL 315 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdls+lege++rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqp+ +fewhlyeyei+++d+lalyrle+klv XP_010924399.1 316 FDLSVLEGESLREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGLKRSYYMDPQPLAHFEWHLYEYEISNCDDLALYRLEFKLV 410 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kksak+k++++sl dlq+++grl+a XP_010924399.1 411 DAKKSAKAKLTSNSLLDLQQQMGRLNA 437 ************************986 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 513 aa Download sequence Send to blast |
MGKGSKTGCR SASHQLFKDK AKNRVDDLQG IFTDLQSARK ESRTADVAVL EEQVHQMLRE 60 WKSELNEPSP ASSLLGNAHV SSELPSETLR LLQLSEEEDD ATSKMCEPAP GNAKAEPLDV 120 PEPNVEKIQG GGTAGFQQDY YVNQELTEHG FLYGNEYQSN LPAESDHGII NCLDGTTHLE 180 FQQFSLHQEL HHNLYLDSSI SEENGGDVLP HMSNFLPTIC PPPSAFLGPK CALWDCPRPA 240 QGSEWCQDYC SSFHATLALN EGPPGMTPVL RPGGIDLKDG PLFAALCAKT QGKNVGIPVC 300 QGAATAKSPW NAPELFDLSV LEGESLREWL FFDKPRRAFE SGNRKQRSLP DYSGRGWHES 360 RKQVMKEFGG LKRSYYMDPQ PLAHFEWHLY EYEISNCDDL ALYRLEFKLV DAKKSAKAKL 420 TSNSLLDLQQ QMGRLNAENS IDNKKNAKIR TKANQMDIAE NIYSTPNTAN QKENELNVYH 480 ASDKMASFNE NSGYGPNFQY FYSVENLKDY CGT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924399.1 | 0.0 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2H3YGG0 | 0.0 | A0A2H3YGG0_PHODC; transcription factor VOZ1 isoform X1 | ||||
STRING | XP_008798279.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|